Factsheet for Solyc06g083690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT4G28730.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	46.99	69.92
PGSC0003DMT400051717	Potato	plastid	96.17	66.92
KRH32275	Soybean	plastid	56.28	62.05
VIT_07s0005g04860.t01	Wine grape	plastid	60.11	61.8
KRH19662	Soybean	plastid	53.55	59.04
Zm00001d031856_P002	Maize	plastid	53.01	58.08
HORVU7Hr1G064020.2	Barley	extracellular	25.68	58.02
CDX92892	Canola	plastid	55.19	56.74
OQU80669	Sorghum	mitochondrion, plastid	47.54	56.49
CDY50922	Canola	plastid	55.19	56.11
Bra010351.1-P	Field mustard	plastid	54.64	55.87
CDY68269	Canola	plastid	54.64	55.87
AT4G28730.1	Thale cress	plastid	53.01	55.75
KRH55649	Soybean	plastid	49.73	55.49
Bra024183.1-P	Field mustard	plastid	50.82	55.36
CDX97456	Canola	plastid	54.64	55.25
Zm00001d049886_P001	Maize	plastid	52.46	53.93
TraesCS7B01G185700.1	Wheat	plastid	49.73	53.53
CDY06875	Canola	plastid	50.82	53.14
TraesCS7A01G293400.1	Wheat	plastid	49.18	52.94
TraesCS7D01G289300.1	Wheat	plastid	49.18	52.94
CDY35215	Canola	plastid	49.73	52.6
Bra011056.1-P	Field mustard	plastid	49.73	52.6
CDY05731	Canola	plastid	46.99	49.43
CDY31980	Canola	plastid	46.45	49.13
Bra036458.1-P	Field mustard	plastid	43.17	47.31
Solyc06g005260.2.1	Tomato	extracellular	25.14	42.59
AT2G20270.2	Thale cress	plastid	46.45	41.26
Os08t0565800-01	Rice	cytosol	35.52	37.14
Solyc03g112770.2.1	Tomato	plastid	24.59	36.0
Solyc11g069860.1.1	Tomato	plastid	24.59	31.47
HORVU7Hr1G064050.1	Barley	mitochondrion	27.32	29.24
Solyc02g084660.2.1	Tomato	mitochondrion	25.14	20.44

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	UniProt:K4CAM4	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g083690.2	EnsemblPlants:Solyc06g083690.2.1	TIGRFAMs:TIGR02180
InterPro:Thioredoxin-like_sf	UniParc:UPI000276B5E6	:	:	:	:

Description

No Description!

Coordinates

chr6:-:49026527..49031489

Molecular Weight (calculated)

20329.5 Da

IEP (calculated)

10.350

GRAVY (calculated)

-0.417

Length

183 amino acids

Sequence
(BLAST)

001: MAATMSLTKN FTTFSIPQSF HPQNGTQIGR HLQRIPNSNY SVPSVRLHRF GSRIENDGPR KIGRVQIRAM SGSFGSRLEE SVKKTITENP VVVYSKSWCS
101: YSTEVKVLFK RLGVDPLVIE LDEMGPQGPQ LQKVLERLTG QHTVPNVFIG AKHIGGCTDT IKLYRKGELE SLLSEAKAGK TES

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.