Factsheet for Solyc06g005260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 22892874
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049116	Potato	cytosol	98.15	98.15
GSMUA_Achr1P24480_001	Banana	cytosol	73.15	74.53
KRH07180	Soybean	cytosol	71.3	71.96
VIT_14s0066g00960.t01	Wine grape	cytosol	75.93	71.93
Os04t0508300-01	Rice	extracellular	73.15	70.54
Bra025584.1-P	Field mustard	cytosol	72.22	70.27
CDY36849	Canola	cytosol	72.22	70.27
CDY44566	Canola	cytosol	72.22	70.27
GSMUA_Achr4P01420_001	Banana	cytosol	66.67	65.45
EES05437	Sorghum	cytosol	67.59	63.48
TraesCS2D01G361400.1	Wheat	plastid	72.22	60.47
TraesCS2A01G363600.1	Wheat	plastid	72.22	60.47
TraesCS2B01G381600.1	Wheat	plastid	72.22	59.54
Os02t0618100-01	Rice	plasma membrane	70.37	59.38
EES11094	Sorghum	plastid	70.37	59.38
Zm00001d003081_P003	Maize	mitochondrion	70.37	58.02
Zm00001d017240_P001	Maize	cytosol, extracellular	68.52	56.06
Solyc03g112770.2.1	Tomato	plastid	63.89	55.2
AT5G40370.2	Thale cress	cytosol	64.81	51.47
CDY15928	Canola	cytosol	69.44	48.08
CDX99634	Canola	cytosol	69.44	48.08
Bra030333.1-P	Field mustard	cytosol	69.44	48.08
Solyc11g069860.1.1	Tomato	plastid	40.74	30.77
Solyc06g083690.2.1	Tomato	plastid	42.59	25.14
Solyc02g084660.2.1	Tomato	mitochondrion	35.19	16.89

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	InterPro:GLR_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794
GO:GO:0005829	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0016020	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0048046	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109
UniProt:K4C310	PFAM:PF00462	PRINTS:PR00160	ScanProsite:PS00195	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF122	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g005260.2	EnsemblPlants:Solyc06g005260.2.1	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf
UniParc:UPI0002765B26	:	:	:	:	:

Description

Glutaredoxin-C2 [Source:Projected from Arabidopsis thaliana (AT5G40370) UniProtKB/Swiss-Prot;Acc:Q9FNE2]

Coordinates

chr6:+:273131..274442

Molecular Weight (calculated)

11278.6 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.106

Length

108 amino acids

Sequence
(BLAST)

001: MSLAKAKEIV SGNPVAVFSK TYCPFCVSVK DLLSKLGATF KAVELDSEKD GSEIQAALAE WTGQRTVPNV FIGGKHIGGC DATTALHREG KLLPLLTEAG
101: AIAKTSTA

Best Arabidopsis Sequence Match ( AT5G40370.1 )
(BLAST)

001: MAMQKAKEIV NSESVVVFSK TYCPYCVRVK ELLQQLGAKF KAVELDTESD GSQIQSGLAE WTGQRTVPNV FIGGNHIGGC DATSNLHKDG KLVPLLTEAG
101: AIAGKTATTS A

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:B3H604]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.