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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • golgi 2
  • mitochondrion 2
  • cytosol 2
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
extracellular: 17951457
extracellular: 18372294
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 17951457 doi
J Zhu, S Alvarez, EL Marsh, ME Lenoble, IJ Cho, M Sivaguru, S Chen, HT Nguyen, Y Wu, DP Schachtman, RE Sharp
Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr1P24480_001 Banana cytosol 73.21 77.36
EES11094 Sorghum plastid 83.93 73.44
TraesCS2B01G381600.1 Wheat plastid 85.71 73.28
Solyc06g005260.2.1 Tomato extracellular 70.54 73.15
PGSC0003DMT400049116 Potato cytosol 70.54 73.15
KRH07180 Soybean cytosol 69.64 72.9
TraesCS2D01G361400.1 Wheat plastid 83.93 72.87
Zm00001d003081_P003 Maize mitochondrion 84.82 72.52
TraesCS2A01G363600.1 Wheat plastid 82.14 71.32
VIT_14s0066g00960.t01 Wine grape cytosol 71.43 70.18
PGSC0003DMT400001269 Potato cytosol 66.07 68.52
Bra025584.1-P Field mustard cytosol 66.96 67.57
CDY44566 Canola cytosol 66.96 67.57
CDY36849 Canola cytosol 66.96 67.57
GSMUA_Achr4P01420_001 Banana cytosol 65.18 66.36
Os02t0618100-01 Rice plasma membrane 70.54 61.72
AT5G40370.2 Thale cress cytosol 62.5 51.47
CDY15928 Canola cytosol 60.71 43.59
CDX99634 Canola cytosol 60.71 43.59
Bra030333.1-P Field mustard cytosol 60.71 43.59
Os06t0659500-01 Rice cytosol, plasma membrane 29.46 42.86
Os02t0646400-01 Rice extracellular 35.71 30.53
Os08t0565800-01 Rice cytosol 32.14 20.57
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10ProteinID:BAA20071.1ProteinID:BAF15184.1ProteinID:BAS90009.1ProteinID:CAE04729.1
ProteinID:EAZ31298.1InterPro:GLR_ASGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009055
GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0022900GO:GO:0045454GO:GO:0055114
InterPro:GlutaredoxinInterPro:Glutaredoxin_euk/virInterPro:Glutaredoxin_subgrInterPro:IPR002109EnsemblPlantsGene:Os04g0508300EnsemblPlants:Os04t0508300-01
UniProt:P55142PFAM:PF00462PRINTS:PR00160ScanProsite:PS00195PFscan:PS51354PANTHER:PTHR10168
PANTHER:PTHR10168:SF122SUPFAM:SSF52833TIGRFAMs:TIGR02180InterPro:Thioredoxin-like_sfUniParc:UPI000016DEAFEMBL:X77150
SEG:seg:::::
Description
GLUTAREDOXINGlutaredoxin. (Os04t0508300-01)
Coordinates
chr4:+:25397069..25399815
Molecular Weight (calculated)
11775.1 Da
IEP (calculated)
5.848
GRAVY (calculated)
0.087
Length
112 amino acids
Sequence
(BLAST)
001: MALAKAKETV ASAPVVVYSK SYCPFCVRVK KLFEQLGATF KAIELDGESD GSELQSALAE WTGQRTVPNV FINGKHIGGC DDTLALNNEG KLVPLLTEAG
101: AIASSAKTTI TA
Best Arabidopsis Sequence Match ( AT5G40370.1 )
(BLAST)
001: MAMQKAKEIV NSESVVVFSK TYCPYCVRVK ELLQQLGAKF KAVELDTESD GSQIQSGLAE WTGQRTVPNV FIGGNHIGGC DATSNLHKDG KLVPLLTEAG
101: AIAGKTATTS A
Arabidopsis Description
Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:B3H604]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.