Factsheet for PGSC0003DMT400049116

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22902798

msms PMID: 22902798 doi

MB Fernández, MR Pagano, GR Daleo, MG Guevara

Instituto de Investigaciones Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, CC 1245, 7600 Mar del Plata, Argentina. Electronic address: mbfernan@mdp.edu.ar.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005260.2.1	Tomato	extracellular	98.15	98.15
PGSC0003DMT400001269	Potato	cytosol	84.26	84.26
GSMUA_Achr1P24480_001	Banana	cytosol	74.07	75.47
KRH07180	Soybean	cytosol	72.22	72.9
VIT_14s0066g00960.t01	Wine grape	cytosol	75.93	71.93
Os04t0508300-01	Rice	extracellular	73.15	70.54
Bra025584.1-P	Field mustard	cytosol	72.22	70.27
CDY44566	Canola	cytosol	72.22	70.27
CDY36849	Canola	cytosol	72.22	70.27
GSMUA_Achr4P01420_001	Banana	cytosol	67.59	66.36
EES05437	Sorghum	cytosol	67.59	63.48
TraesCS2A01G363600.1	Wheat	plastid	72.22	60.47
TraesCS2D01G361400.1	Wheat	plastid	71.3	59.69
TraesCS2B01G381600.1	Wheat	plastid	72.22	59.54
EES11094	Sorghum	plastid	70.37	59.38
Os02t0618100-01	Rice	plasma membrane	70.37	59.38
Zm00001d003081_P003	Maize	mitochondrion	70.37	58.02
Zm00001d017240_P001	Maize	cytosol, extracellular	68.52	56.06
PGSC0003DMT400046764	Potato	plastid	60.19	52.0
AT5G40370.2	Thale cress	cytosol	64.81	51.47
Bra030333.1-P	Field mustard	cytosol	70.37	48.72
CDX99634	Canola	cytosol	70.37	48.72
CDY15928	Canola	cytosol	70.37	48.72
PGSC0003DMT400020793	Potato	endoplasmic reticulum, extracellular	40.74	30.77
PGSC0003DMT400051717	Potato	plastid	42.59	17.49
PGSC0003DMT400009308	Potato	mitochondrion	35.19	16.89

Protein Annotations

EntrezGene:102577465	MapMan:18.8.2	Gene3D:3.40.30.10	ProteinID:ABU96710	ProteinID:ABU96710.1	UniProt:B3F8F4
EMBL:EF635997	InterPro:GLR_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	RefSeq:NP_001274936.1	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400019088	PGSC:PGSC0003DMG400019088
EnsemblPlants:PGSC0003DMT400049116	PRINTS:PR00160	ScanProsite:PS00195	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF122
SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI0001756CCC	:	:

Description

Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400019088]

Coordinates

chr6:-:6162045..6163531

Molecular Weight (calculated)

11264.6 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.104

Length

108 amino acids

Sequence
(BLAST)

001: MSLAKAKEIV SGNPVAVFSK TYCPFCVSVK DLLSKLGATF KAVELDSEKD GSEIQAALAE WTGQRTVPNV FIGGKHIGGC DATTALHREG KLVPLLTEAG
101: ALAKTSTA

Best Arabidopsis Sequence Match ( AT5G40370.1 )
(BLAST)

001: MAMQKAKEIV NSESVVVFSK TYCPYCVRVK ELLQQLGAKF KAVELDTESD GSQIQSGLAE WTGQRTVPNV FIGGNHIGGC DATSNLHKDG KLVPLLTEAG
101: AIAGKTATTS A

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:B3H604]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.