CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P24480_001	Banana	cytosol	74.77	75.47
PGSC0003DMT400049116	Potato	cytosol	72.9	72.22
Solyc06g005260.2.1	Tomato	extracellular	71.96	71.3
Os04t0508300-01	Rice	extracellular	72.9	69.64
PGSC0003DMT400001269	Potato	cytosol	70.09	69.44
VIT_14s0066g00960.t01	Wine grape	cytosol	71.96	67.54
GSMUA_Achr4P01420_001	Banana	cytosol	69.16	67.27
EES05437	Sorghum	cytosol	68.22	63.48
Bra025584.1-P	Field mustard	cytosol	65.42	63.06
CDY44566	Canola	cytosol	65.42	63.06
CDY36849	Canola	cytosol	65.42	63.06
EES11094	Sorghum	plastid	73.83	61.72
Zm00001d003081_P003	Maize	mitochondrion	72.9	59.54
TraesCS2D01G361400.1	Wheat	plastid	71.03	58.91
TraesCS2B01G381600.1	Wheat	plastid	71.96	58.78
TraesCS2A01G363600.1	Wheat	plastid	70.09	58.14
Os02t0618100-01	Rice	plasma membrane	67.29	56.25
Zm00001d017240_P001	Maize	cytosol, extracellular	69.16	56.06
AT5G40370.2	Thale cress	cytosol	61.68	48.53
CDY15928	Canola	cytosol	65.42	44.87
CDX99634	Canola	cytosol	65.42	44.87
Bra030333.1-P	Field mustard	cytosol	65.42	44.87
KRH32275	Soybean	plastid	46.73	30.12
KRH76731	Soybean	extracellular, golgi	35.51	29.46
KRH28731	Soybean	endoplasmic reticulum, extracellular	35.51	29.46
KRH37371	Soybean	endoplasmic reticulum	36.45	29.32
KRH19662	Soybean	plastid	44.86	28.92
KRH12368	Soybean	endoplasmic reticulum	35.51	28.36
KRH55649	Soybean	plastid	40.19	26.22

Protein Annotations

EntrezGene:100305517	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02009946	EMBL:BT089149	UniProt:C6SVF6
InterPro:GLR_AS	EnsemblPlantsGene:GLYMA_16G072400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005829
GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0016020	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0048046
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EnsemblPlants:KRH07180
ProteinID:KRH07180	ProteinID:KRH07180.1	PFAM:PF00462	PRINTS:PR00160	ScanProsite:PS00195	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF122	SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI00018C7121

Description

hypothetical protein

Coordinates

chr16:+:7292429..7294920

Molecular Weight (calculated)

11298.6 Da

IEP (calculated)

6.498

GRAVY (calculated)

0.118

Length

107 amino acids

Sequence
(BLAST)

001: MALPKAKEIV SSNSVVVFSK TYCPFCVDVK KLFGDLGANY KAIELDTESD GKELQAALVE WTDQRTVPNV FIGGNHIGGC DSTTALHTQG KLVPLLISAG
101: AVAKSTA

Best Arabidopsis Sequence Match ( AT5G40370.1 )
(BLAST)

001: MAMQKAKEIV NSESVVVFSK TYCPYCVRVK ELLQQLGAKF KAVELDTESD GSQIQSGLAE WTGQRTVPNV FIGGNHIGGC DATSNLHKDG KLVPLLTEAG
101: AIAGKTATTS A

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:B3H604]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.