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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 6
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH37371 Soybean endoplasmic reticulum 91.79 92.48
HORVU7Hr1G009480.1 Barley cytosol 25.37 77.27
HORVU7Hr1G110720.1 Barley cytosol 45.52 73.49
Os06t0659500-01 Rice cytosol, plasma membrane 40.3 70.13
HORVU3Hr1G028600.1 Barley cytosol 31.34 66.67
CDX92459 Canola endoplasmic reticulum, golgi 61.94 63.85
Bra020106.1-P Field mustard endoplasmic reticulum 61.94 62.41
VIT_11s0052g00500.t01 Wine grape endoplasmic reticulum, extracellular 62.69 61.76
Bra002306.1-P Field mustard golgi 60.45 61.36
AT5G20500.1 Thale cress endoplasmic reticulum 61.19 60.74
CDY16539 Canola endoplasmic reticulum 59.7 60.61
GSMUA_Achr7P04990_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 55.97 59.52
EER88767 Sorghum mitochondrion 56.72 56.3
TraesCS7D01G480900.1 Wheat mitochondrion, plastid 56.72 56.3
TraesCS7A01G493400.1 Wheat mitochondrion, plastid 56.72 56.3
HORVU7Hr1G110810.1 Barley endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 57.46 56.2
PGSC0003DMT400020793 Potato endoplasmic reticulum, extracellular 59.7 55.94
TraesCS7B01G404000.1 Wheat mitochondrion, plastid 55.97 55.56
Solyc11g069860.1.1 Tomato plastid 58.96 55.24
Zm00001d046900_P003 Maize mitochondrion 55.22 54.81
GSMUA_Achr1P10400_001 Banana plastid 53.73 54.55
KRH28731 Soybean endoplasmic reticulum, extracellular 45.52 47.29
KRH76731 Soybean extracellular, golgi 44.78 46.51
GSMUA_Achr1P23530_001 Banana extracellular 44.78 43.8
CDY45086 Canola endoplasmic reticulum 54.48 39.67
KRH07180 Soybean cytosol 28.36 35.51
KRH55649 Soybean plastid 35.07 28.66
KRH32275 Soybean plastid 35.07 28.31
KRH19662 Soybean plastid 32.09 25.9
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10UniProt:A0A0R4J5C6EMBL:ACUP02009308InterPro:GLR_ASEnsemblPlantsGene:GLYMA_15G168700
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0022900
GO:GO:0045454GO:GO:0055114InterPro:GlutaredoxinInterPro:Glutaredoxin_euk/virInterPro:Glutaredoxin_subgrInterPro:IPR002109
EnsemblPlants:KRH12368ProteinID:KRH12368ProteinID:KRH12368.1PFAM:PF00462PRINTS:PR00160ScanProsite:PS00195
PFscan:PS51354PANTHER:PTHR10168PANTHER:PTHR10168:SF116SUPFAM:SSF52833SignalP:SignalP-noTMTIGRFAMs:TIGR02180
InterPro:Thioredoxin-like_sfUniParc:UPI00018C72F9SEG:seg:::
Description
hypothetical protein
Coordinates
chr15:+:15027863..15030451
Molecular Weight (calculated)
14859.8 Da
IEP (calculated)
6.389
GRAVY (calculated)
-0.137
Length
134 amino acids
Sequence
(BLAST)
001: MASRLTVTAL VLIALATVSL QTSASSVGKF IDETITSHKI VIFSKTYCPY CRRAKAVFKE LNQVPHVVEL DEREDGSKIQ DIMINIVGRR TVPQVFINGK
101: HLGGSDDTVE AYESGHLHKL LGIETKDHDD HDDL
Best Arabidopsis Sequence Match ( AT5G20500.1 )
(BLAST)
001: MTMFRSISMV MLLVALVTFI SMVSSAASSP EADFVKKTIS SHKIVIFSKS YCPYCKKAKS VFRELDQVPY VVELDEREDG WSIQTALGEI VGRRTVPQVF
101: INGKHLGGSD DTVDAYESGE LAKLLGVSGN KEAEL
Arabidopsis Description
GRXC4Glutaredoxin-C4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFQ6]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.