CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH23958
KRH39841
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	KRH03466	AT3G47620.1	21798944
AT4G28730.1	KRH54542	AT3G47620.1	21798944
AT4G28730.1	KRH56919	AT3G47620.1	21798944
AT4G28730.1	KRH63357	AT3G47620.1	21798944
AT4G28730.1	KRH23958	AT4G25200.1	21798944
AT4G28730.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32275	Soybean	plastid	83.13	83.13
KRH55649	Soybean	plastid	72.29	73.17
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	49.4	66.67
VIT_07s0005g04860.t01	Wine grape	plastid	63.86	59.55
HORVU7Hr1G064020.2	Barley	extracellular	27.71	56.79
Zm00001d031856_P002	Maize	plastid	54.22	53.89
Solyc06g083690.2.1	Tomato	plastid	59.04	53.55
OQU80669	Sorghum	mitochondrion, plastid	48.8	52.6
TraesCS7B01G185700.1	Wheat	plastid	53.01	51.76
AT4G28730.1	Thale cress	plastid	54.22	51.72
TraesCS7D01G289300.1	Wheat	plastid	52.41	51.18
TraesCS7A01G293400.1	Wheat	plastid	52.41	51.18
CDY05731	Canola	plastid	53.61	51.15
CDX92892	Canola	plastid	54.82	51.12
CDY50922	Canola	plastid	54.82	50.56
CDY31980	Canola	plastid	52.41	50.29
CDY06875	Canola	plastid	53.01	50.29
CDY68269	Canola	plastid	53.61	49.72
Bra010351.1-P	Field mustard	plastid	53.61	49.72
CDX97456	Canola	plastid	53.61	49.17
CDY35215	Canola	plastid	51.2	49.13
Bra011056.1-P	Field mustard	plastid	51.2	49.13
Bra024183.1-P	Field mustard	plastid	49.4	48.81
Zm00001d049886_P001	Maize	plastid	51.81	48.31
Bra036458.1-P	Field mustard	plastid	47.59	47.31
KRH07180	Soybean	cytosol	28.92	44.86
AT2G20270.2	Thale cress	plastid	52.41	42.23
PGSC0003DMT400051717	Potato	plastid	59.04	37.26
Os08t0565800-01	Rice	cytosol	34.94	33.14
KRH12368	Soybean	endoplasmic reticulum	25.9	32.09
KRH37371	Soybean	endoplasmic reticulum	25.3	31.58
KRH76731	Soybean	extracellular, golgi	23.49	30.23
KRH28731	Soybean	endoplasmic reticulum, extracellular	23.49	30.23
HORVU7Hr1G064050.1	Barley	mitochondrion	27.71	26.9

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	UniProt:A0A0R0GMP7	EMBL:ACUP02008197	EnsemblPlantsGene:GLYMA_13G128900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EnsemblPlants:KRH19662
ProteinID:KRH19662	ProteinID:KRH19662.1	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI00018C72F8	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:24209750..24212616

Molecular Weight (calculated)

18169.4 Da

IEP (calculated)

10.180

GRAVY (calculated)

-0.136

Length

166 amino acids

Sequence
(BLAST)

001: MALALGNAIP LSNLKPCPKL SCCCMKKLFF THSVPISRIP TTPKRTPTTV VRATSSFGSR LEDTIKKTVA ENPVVLYSKT WCSYSSEVKI LFKKLGVDPL
101: VFELDEMGPQ GPQLHKVLER ITGQHTVPNV FIGGKHIGGC TDTLKLYRKG ELEPLLSKAN AKKTGS

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.