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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010351.1-P Field mustard plastid 99.44 99.44
CDX97456 Canola plastid 98.32 97.24
CDX92892 Canola plastid 79.89 80.34
CDY50922 Canola plastid 80.45 80.0
AT4G28730.1 Thale cress plastid 77.65 79.89
CDY06875 Canola plastid 75.98 77.71
CDY35215 Canola plastid 74.86 77.46
GSMUA_Achr1P11150_001 Banana cytosol, plastid 47.49 69.11
HORVU7Hr1G064020.2 Barley extracellular 27.37 60.49
KRH32275 Soybean plastid 52.51 56.63
OQU80669 Sorghum mitochondrion, plastid 48.04 55.84
Zm00001d031856_P002 Maize plastid 51.4 55.09
VIT_07s0005g04860.t01 Wine grape plastid 54.75 55.06
Solyc06g083690.2.1 Tomato plastid 55.87 54.64
KRH19662 Soybean plastid 49.72 53.61
KRH55649 Soybean plastid 48.6 53.05
TraesCS7B01G185700.1 Wheat plastid 50.28 52.94
TraesCS7D01G289300.1 Wheat plastid 50.28 52.94
TraesCS7A01G293400.1 Wheat plastid 50.28 52.94
Zm00001d049886_P001 Maize plastid 51.4 51.69
CDY05731 Canola plastid 49.16 50.57
CDY31980 Canola plastid 47.49 49.13
CDY44566 Canola cytosol 27.37 44.14
CDY36849 Canola cytosol 27.37 44.14
CDY16750 Canola cytosol 26.82 41.38
CDX87275 Canola cytosol 26.82 41.38
CDY16749 Canola cytosol 27.37 39.2
CDX87276 Canola cytosol 27.37 39.2
CDX84377 Canola cytosol 25.7 38.33
CDY00348 Canola cytosol 25.7 38.33
PGSC0003DMT400051717 Potato plastid 54.75 37.26
CDX92459 Canola endoplasmic reticulum, golgi 26.26 36.15
CDY16539 Canola endoplasmic reticulum 26.26 35.61
Os08t0565800-01 Rice cytosol 34.64 35.43
CDX81399 Canola extracellular, plasma membrane 23.46 30.88
CDY18599 Canola extracellular, vacuole 22.91 30.6
CDY15928 Canola cytosol 26.26 30.13
HORVU7Hr1G064050.1 Barley mitochondrion 28.49 29.82
CDX99634 Canola cytosol 25.7 29.49
CDY45086 Canola endoplasmic reticulum 25.7 25.0
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10GO:A0A078JND8UniProt:A0A078JND8EnsemblPlants:CDY68269ProteinID:CDY68269
ProteinID:CDY68269.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0006091
GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0015035GO:GO:0019725
GO:GO:0022900GO:GO:0045454GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00072739001InterPro:GlutaredoxinInterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgrInterPro:IPR002109PFAM:PF00462PRINTS:PR00160PFscan:PS51354PANTHER:PTHR10168
PANTHER:PTHR10168:SF14SUPFAM:SSF52833TIGRFAMs:TIGR02180InterPro:Thioredoxin-like_sfUniParc:UPI0001D83ECDSEG:seg
Description
BnaA08g30760DBnaA08g30760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JND8]
Coordinates
chrLK037088:+:1266..2452
Molecular Weight (calculated)
19341.5 Da
IEP (calculated)
9.992
GRAVY (calculated)
-0.011
Length
179 amino acids
Sequence
(BLAST)
001: MAVTTFNTLR LVSSSLDSIP SISFSTSYSL SLISVGGITC SDVKRCLKHT CSVRAMSSSS AASSSSFGSR MEESVKKTVT ENVVVVYSKT WCSYCIEVKT
101: LFKRLGVQPL VIELNELGPQ GPQLQKVLER LTGQRTVPNV FVGGKHIGGC TDTVKLKRKG DLALMLAEAN GKTDQTLRK
Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)
001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
Arabidopsis Description
GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.