Factsheet for Zm00001d031856_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d044874_P001
Zm00001d052194_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT4G28730.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80669	Sorghum	mitochondrion, plastid	82.04	88.96
Zm00001d049886_P001	Maize	plastid	88.62	83.15
TraesCS7B01G185700.1	Wheat	plastid	79.04	77.65
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	56.89	77.24
TraesCS7D01G289300.1	Wheat	plastid	78.44	77.06
TraesCS7A01G293400.1	Wheat	plastid	78.44	77.06
HORVU7Hr1G064020.2	Barley	extracellular	32.93	67.9
KRH19662	Soybean	plastid	53.89	54.22
VIT_07s0005g04860.t01	Wine grape	plastid	57.48	53.93
KRH32275	Soybean	plastid	52.69	53.01
Solyc06g083690.2.1	Tomato	plastid	58.08	53.01
CDX97456	Canola	plastid	56.29	51.93
AT4G28730.1	Thale cress	plastid	53.89	51.72
CDX92892	Canola	plastid	55.09	51.69
CDY50922	Canola	plastid	55.69	51.67
Bra010351.1-P	Field mustard	plastid	55.09	51.4
CDY68269	Canola	plastid	55.09	51.4
KRH55649	Soybean	plastid	49.7	50.61
Bra024183.1-P	Field mustard	plastid	50.9	50.6
CDY35215	Canola	plastid	52.1	50.29
Bra011056.1-P	Field mustard	plastid	52.1	50.29
CDY06875	Canola	plastid	52.69	50.29
CDY05731	Canola	plastid	48.5	46.55
CDY31980	Canola	plastid	47.31	45.66
Bra036458.1-P	Field mustard	plastid	43.11	43.11
Os08t0565800-01	Rice	cytosol	43.11	41.14
HORVU7Hr1G064050.1	Barley	mitochondrion	41.32	40.35
AT2G20270.2	Thale cress	plastid	45.51	36.89
Zm00001d046900_P003	Maize	mitochondrion	29.34	36.3
PGSC0003DMT400051717	Potato	plastid	56.89	36.12
Zm00001d003081_P003	Maize	mitochondrion	26.95	34.35
Zm00001d017240_P001	Maize	cytosol, extracellular	22.16	28.03
Zm00001d017417_P001	Maize	cytosol	20.36	26.15

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	UniProt:B4FIR4	EMBL:BT037002	EMBL:BT041276	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	ProteinID:ONM03819.1
PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833
TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI00017B6F3C	EnsemblPlantsGene:Zm00001d031856	EnsemblPlants:Zm00001d031856_P002	EnsemblPlants:Zm00001d031856_T002
SEG:seg	:	:	:	:	:

Description

Glutaredoxin-C5 chloroplastic

Coordinates

chr1:-:204243279..204248168

Molecular Weight (calculated)

17976.8 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.186

Length

167 amino acids

Sequence
(BLAST)

001: MPPPQSGMTL CRLPKATLGL PLSLPSLLYR PSLSLAARRT KAVSARASSS SPSPDSSFGS RMEDSVKKTV ADNPVVIYSK SWCSYSMEVK SLFKRIGVQP
101: HVIELDNLGA QGPQLQKVLE RLTGQSTVPN VFIGGKHVGG CTDTVKLYRK GELASMLSDL DINIDNS

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.