CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	CDY24170	AT3G47620.1	21798944
AT4G28730.1	CDY36943	AT3G47620.1	21798944
AT4G28730.1	CDX89437	AT4G25200.1	21798944
AT4G28730.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024183.1-P	Field mustard	plastid	88.2	93.45
CDY50922	Canola	plastid	93.26	92.22
AT4G28730.1	Thale cress	plastid	80.9	82.76
CDY06875	Canola	plastid	80.9	82.29
CDY35215	Canola	plastid	79.21	81.5
CDY68269	Canola	plastid	80.34	79.89
CDX97456	Canola	plastid	80.9	79.56
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	47.19	68.29
KRH32275	Soybean	plastid	55.62	59.64
HORVU7Hr1G064020.2	Barley	extracellular	26.97	59.26
VIT_07s0005g04860.t01	Wine grape	plastid	57.87	57.87
KRH55649	Soybean	plastid	52.81	57.32
OQU80669	Sorghum	mitochondrion, plastid	48.31	55.84
Solyc06g083690.2.1	Tomato	plastid	56.74	55.19
Zm00001d031856_P002	Maize	plastid	51.69	55.09
KRH19662	Soybean	plastid	51.12	54.82
TraesCS7A01G293400.1	Wheat	plastid	51.69	54.12
TraesCS7B01G185700.1	Wheat	plastid	51.69	54.12
TraesCS7D01G289300.1	Wheat	plastid	51.69	54.12
Zm00001d049886_P001	Maize	plastid	52.81	52.81
CDY05731	Canola	plastid	49.44	50.57
CDY31980	Canola	plastid	48.31	49.71
CDY44566	Canola	cytosol	26.97	43.24
CDY36849	Canola	cytosol	26.97	43.24
CDX87275	Canola	cytosol	26.4	40.52
CDX84377	Canola	cytosol	26.97	40.0
CDX87276	Canola	cytosol	28.09	40.0
CDY00348	Canola	cytosol	26.97	40.0
CDY16750	Canola	cytosol	25.84	39.66
CDY16749	Canola	cytosol	27.53	39.2
PGSC0003DMT400051717	Potato	plastid	56.18	38.02
Os08t0565800-01	Rice	cytosol	36.52	37.14
CDY16539	Canola	endoplasmic reticulum	25.84	34.85
CDX92459	Canola	endoplasmic reticulum, golgi	25.28	34.62
CDX81399	Canola	extracellular, plasma membrane	23.03	30.15
CDY18599	Canola	extracellular, vacuole	22.47	29.85
HORVU7Hr1G064050.1	Barley	mitochondrion	27.53	28.66
CDX99634	Canola	cytosol	24.72	28.21
CDY15928	Canola	cytosol	24.72	28.21
CDY45086	Canola	endoplasmic reticulum	24.72	23.91

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078DVI1	EnsemblPlants:CDX92892	ProteinID:CDX92892	ProteinID:CDX92892.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00154734001	InterPro:Glutaredoxin
InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EF0B3E
SEG:seg	:	:	:	:	:

Description

BnaC07g41500D

Coordinates

chrLK031873:+:1380874..1382390

Molecular Weight (calculated)

19300.3 Da

IEP (calculated)

9.699

GRAVY (calculated)

-0.102

Length

178 amino acids

Sequence
(BLAST)

001: MAVSAFNPLK LASSSSLDSI PSISYSTSYS LFLISVGIRK SVGSPFKRCL KQSYSSVRAM SPSAASSSFG SRMEESVRKT VTENIVVVYS KTWCSYCTEV
101: KTLFKRLGVQ PLVIELDELG PQGPQLQKVL ERLTGQHTVP NVFVGGKHIG GCTDTVKLNR KGDLELMLAE ANGNTNQT

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.