CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER89430
EER89431
EES07255
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	EER88112	AT3G47620.1	21798944
AT4G28730.1	EES07255	AT3G47620.1	21798944
AT4G28730.1	EER89430	AT4G25200.1	21798944
AT4G28730.1	EER89431	AT4G25200.1	21798944
AT4G28730.1	KXG19616	AT4G25200.1	21798944
AT4G28730.1	OQU75612	AT4G25200.1	21798944
AT4G28730.1	OQU75930	AT4G25200.1	21798944
AT4G28730.1	OQU76071	AT4G25200.1	21798944
AT4G28730.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031856_P002	Maize	plastid	88.96	82.04
Zm00001d049886_P001	Maize	plastid	90.26	78.09
TraesCS7B01G185700.1	Wheat	plastid	79.22	71.76
TraesCS7D01G289300.1	Wheat	plastid	78.57	71.18
TraesCS7A01G293400.1	Wheat	plastid	78.57	71.18
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	56.49	70.73
HORVU7Hr1G064020.2	Barley	extracellular	30.52	58.02
Bra024183.1-P	Field mustard	plastid	56.49	51.79
CDY50922	Canola	plastid	57.79	49.44
AT4G28730.1	Thale cress	plastid	55.19	48.85
KRH32275	Soybean	plastid	52.6	48.8
KRH19662	Soybean	plastid	52.6	48.8
CDX97456	Canola	plastid	57.14	48.62
CDX92892	Canola	plastid	55.84	48.31
Bra010351.1-P	Field mustard	plastid	55.84	48.04
CDY68269	Canola	plastid	55.84	48.04
VIT_07s0005g04860.t01	Wine grape	plastid	55.19	47.75
Solyc06g083690.2.1	Tomato	plastid	56.49	47.54
KRH55649	Soybean	plastid	49.35	46.34
CDY06875	Canola	plastid	51.95	45.71
CDY35215	Canola	plastid	50.0	44.51
Bra011056.1-P	Field mustard	plastid	50.0	44.51
HORVU7Hr1G064050.1	Barley	mitochondrion	46.75	42.11
Bra036458.1-P	Field mustard	plastid	44.81	41.32
CDY05731	Canola	plastid	45.45	40.23
CDY31980	Canola	plastid	44.16	39.31
Os08t0565800-01	Rice	cytosol	41.56	36.57
EER88767	Sorghum	mitochondrion	30.52	34.81
AT2G20270.2	Thale cress	plastid	44.81	33.5
PGSC0003DMT400051717	Potato	plastid	55.84	32.7
EES11094	Sorghum	plastid	25.32	30.47
EES05437	Sorghum	cytosol	22.08	29.57
EES07538	Sorghum	endoplasmic reticulum, extracellular	24.03	29.37

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	UniProt:A0A1Z5RAS2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EnsemblPlants:OQU80669	ProteinID:OQU80669	ProteinID:OQU80669.1	PFAM:PF00462
PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	EnsemblPlantsGene:SORBI_3007G162300	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI000B8B9D21	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:59647432..59650157

Molecular Weight (calculated)

16704.3 Da

IEP (calculated)

10.149

GRAVY (calculated)

-0.074

Length

154 amino acids

Sequence
(BLAST)

001: MALCRLPTAT VGLPLSLPCL LSRPRMSLAA RRARAVAARA SSSSSSSPSP DSSFGSRMED SVKKTVADNP VVIYSKSWCS YSMEVKALFK RIGVQPHVIE
101: LDHLGAQGPQ LQKVLERLTG QTTVPNVFID TVKLYRKGEL ASMLSDLDIN INNS

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.