CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	CDY24170	AT3G47620.1	21798944
AT4G28730.1	CDY36943	AT3G47620.1	21798944
AT4G28730.1	CDX89437	AT4G25200.1	21798944
AT4G28730.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68269	Canola	plastid	97.24	98.32
AT4G28730.1	Thale cress	plastid	78.45	81.61
CDX92892	Canola	plastid	79.56	80.9
CDY50922	Canola	plastid	80.11	80.56
CDY06875	Canola	plastid	75.69	78.29
CDY35215	Canola	plastid	74.59	78.03
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	48.07	70.73
HORVU7Hr1G064020.2	Barley	extracellular	27.07	60.49
OQU80669	Sorghum	mitochondrion, plastid	48.62	57.14
KRH32275	Soybean	plastid	51.93	56.63
Zm00001d031856_P002	Maize	plastid	51.93	56.29
VIT_07s0005g04860.t01	Wine grape	plastid	54.14	55.06
Solyc06g083690.2.1	Tomato	plastid	55.25	54.64
TraesCS7A01G293400.1	Wheat	plastid	50.83	54.12
TraesCS7B01G185700.1	Wheat	plastid	50.83	54.12
TraesCS7D01G289300.1	Wheat	plastid	50.83	54.12
KRH19662	Soybean	plastid	49.17	53.61
KRH55649	Soybean	plastid	48.07	53.05
Zm00001d049886_P001	Maize	plastid	51.93	52.81
CDY05731	Canola	plastid	48.07	50.0
CDY31980	Canola	plastid	46.96	49.13
CDY44566	Canola	cytosol	27.62	45.05
CDY36849	Canola	cytosol	27.62	45.05
CDX87275	Canola	cytosol	27.07	42.24
CDY16750	Canola	cytosol	27.07	42.24
CDY16749	Canola	cytosol	27.62	40.0
CDX87276	Canola	cytosol	27.62	40.0
CDX84377	Canola	cytosol	25.97	39.17
CDY00348	Canola	cytosol	25.97	39.17
CDX92459	Canola	endoplasmic reticulum, golgi	27.62	38.46
CDY16539	Canola	endoplasmic reticulum	27.62	37.88
PGSC0003DMT400051717	Potato	plastid	54.14	37.26
Os08t0565800-01	Rice	cytosol	34.25	35.43
HORVU7Hr1G064050.1	Barley	mitochondrion	29.28	30.99
CDX81399	Canola	extracellular, plasma membrane	23.2	30.88
CDY15928	Canola	cytosol	26.52	30.77
CDY18599	Canola	extracellular, vacuole	22.65	30.6
CDX99634	Canola	cytosol	25.97	30.13
CDY45086	Canola	endoplasmic reticulum	26.52	26.09

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078E8B7	EnsemblPlants:CDX97456	ProteinID:CDX97456	ProteinID:CDX97456.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00104626001	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr
InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14
SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EB2702	SEG:seg	:

Description

BnaC08g13210D

Coordinates

chrLK031899:+:826138..827430

Molecular Weight (calculated)

19500.7 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.006

Length

181 amino acids

Sequence
(BLAST)

001: MAVTAFNTLR LVSSSLDSIP SISFSTSYSL SLISVGGITC SDVKRCLKHT CSVRAMSSSS SSAASSSTFG SRMEESVKKT VTENVVVVYS KTWCSYCIEV
101: KTLFKRLGVQ PLVIELDELG PQGPQLQKVL ERLTGQRTVP NVFVGGKHIG GCTDTVKLKR KGDLALMLAE ANGKTDQTLR K

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.