Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16750 | Canola | cytosol | 89.66 | 89.66 |
| CDY16749 | Canola | cytosol | 78.45 | 72.8 |
| CDX87276 | Canola | cytosol | 77.59 | 72.0 |
| CDX84377 | Canola | cytosol | 74.14 | 71.67 |
| CDY00348 | Canola | cytosol | 74.14 | 71.67 |
| VIT_17s0000g08670.t01 | Wine grape | cytosol | 68.1 | 63.71 |
| CDY44566 | Canola | cytosol | 54.31 | 56.76 |
| CDY36849 | Canola | cytosol | 54.31 | 56.76 |
| Solyc03g112770.2.1 | Tomato | plastid | 59.48 | 55.2 |
| PGSC0003DMT400046764 | Potato | plastid | 57.76 | 53.6 |
| GSMUA_Achr3P18650_001 | Banana | extracellular | 43.1 | 51.55 |
| CDX99634 | Canola | cytosol | 55.17 | 41.03 |
| CDY15928 | Canola | cytosol | 55.17 | 41.03 |
| CDX92459 | Canola | endoplasmic reticulum, golgi | 37.93 | 33.85 |
| CDY16539 | Canola | endoplasmic reticulum | 37.07 | 32.58 |
| CDY18599 | Canola | extracellular, vacuole | 34.48 | 29.85 |
| CDX81399 | Canola | extracellular, plasma membrane | 33.62 | 28.68 |
| CDY06875 | Canola | plastid | 43.1 | 28.57 |
| CDY35215 | Canola | plastid | 42.24 | 28.32 |
| CDX97456 | Canola | plastid | 42.24 | 27.07 |
| CDY68269 | Canola | plastid | 41.38 | 26.82 |
| CDY31980 | Canola | plastid | 39.66 | 26.59 |
| CDY05731 | Canola | plastid | 39.66 | 26.44 |
| CDX92892 | Canola | plastid | 40.52 | 26.4 |
| CDY50922 | Canola | plastid | 40.52 | 26.11 |
| CDY45086 | Canola | endoplasmic reticulum | 33.62 | 21.2 |
Protein Annotations
| MapMan:18.8.2 | Gene3D:3.40.30.10 | GO:A0A078DDH6 | EnsemblPlants:CDX87275 | ProteinID:CDX87275 | ProteinID:CDX87275.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00146232001 | InterPro:Glutaredoxin |
| InterPro:Glutaredoxin_euk/vir | InterPro:Glutaredoxin_subgr | InterPro:IPR002109 | PFAM:PF00462 | PRINTS:PR00160 | PFscan:PS51354 |
| PANTHER:PTHR10168 | PANTHER:PTHR10168:SF73 | SUPFAM:SSF52833 | TIGRFAMs:TIGR02180 | InterPro:Thioredoxin-like_sf | UniParc:UPI0004EC5C05 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g05900D
Coordinates
chrLK031849:-:1697725..1699203
Molecular Weight (calculated)
12790.6 Da
IEP (calculated)
8.837
GRAVY (calculated)
-0.277
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKEEKEKAM NKAKEIVTSY PVVVFSKTYC GYCQKVKRLL TQLGADFEVL ELDEMRDGGE IQSALSKWTG QSTVPSVFIK GKHMGGCDSV MESNRKGKLV
101: PLLIEADALG KISSKL
101: PLLIEADALG KISSKL
001: MGSMFSGNRM SKEEMEVVVN KAKEIVSAYP VVVFSKTYCG YCQRVKQLLT QLGATFKVLE LDEMSDGGEI QSALSEWTGQ TTVPNVFIKG NHIGGCDRVM
101: ETNKQGKLVP LLTEAGAIAD NSSQL
101: ETNKQGKLVP LLTEAGAIAD NSSQL
Arabidopsis Description
GRXC1Glutaredoxin-C1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8T2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.