Factsheet for Bra024183.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	Bra018126.1-P	AT3G47620.1	21798944
AT4G28730.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50922	Canola	plastid	98.81	92.22
CDX92892	Canola	plastid	93.45	88.2
AT4G28730.1	Thale cress	plastid	79.76	77.01
Bra011056.1-P	Field mustard	plastid	77.98	75.72
Bra010351.1-P	Field mustard	plastid	77.98	73.18
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	45.24	61.79
OQU80669	Sorghum	mitochondrion, plastid	51.79	56.49
KRH32275	Soybean	plastid	53.57	54.22
VIT_07s0005g04860.t01	Wine grape	plastid	55.95	52.81
KRH55649	Soybean	plastid	50.6	51.83
Zm00001d031856_P002	Maize	plastid	50.6	50.9
Solyc06g083690.2.1	Tomato	plastid	55.36	50.82
TraesCS7A01G293400.1	Wheat	plastid	50.0	49.41
TraesCS7B01G185700.1	Wheat	plastid	50.0	49.41
TraesCS7D01G289300.1	Wheat	plastid	50.0	49.41
KRH19662	Soybean	plastid	48.81	49.4
Zm00001d049886_P001	Maize	plastid	51.79	48.88
Bra036458.1-P	Field mustard	plastid	48.21	48.5
HORVU7Hr1G064020.2	Barley	extracellular	23.21	48.15
Bra025584.1-P	Field mustard	cytosol	24.4	36.94
PGSC0003DMT400051717	Potato	plastid	54.76	34.98
Bra035868.1-P	Field mustard	cytosol	23.81	34.48
Bra035867.1-P	Field mustard	cytosol	25.6	34.4
Bra038602.1-P	Field mustard	cytosol	24.4	34.17
Bra020106.1-P	Field mustard	endoplasmic reticulum	25.0	31.58
Os08t0565800-01	Rice	cytosol	32.74	31.43
Bra002306.1-P	Field mustard	golgi	23.81	30.3
HORVU7Hr1G064050.1	Barley	mitochondrion	28.57	28.07
Bra037174.1-P	Field mustard	extracellular, vacuole	20.24	25.37
Bra030333.1-P	Field mustard	cytosol	22.02	23.72

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra024183	EnsemblPlants:Bra024183.1	EnsemblPlants:Bra024183.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	UniProt:M4E5X9	PFAM:PF00462
PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0002540C3F	SEG:seg	:	:	:	:

Description

AT4G28730 (E=9e-036) | glutaredoxin family protein

Coordinates

chrA03:+:27060492..27061728

Molecular Weight (calculated)

18250.9 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.090

Length

168 amino acids

Sequence
(BLAST)

001: MAVSAFNPLK FASSSSLDSI PSISSSTSYS LFPASIGIRN SVGSPFMRCL KQSCSSVRAM SASSSSSFGS RMEESVRKTV TENIVVVYSK TWCSYCTEVK
101: TLFKRLGVQP LVIELDELGP QGPQLQKVLE RLTGQHTVPN VFVDTVKLNR KGDLELMLAE ANGNTNQT

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.