Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23508561
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016446_P001 | |
| Zm00001d046900_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G14720.1 | Zm00001d016446_P001 | AT4G16190.1 | 23738689 |
| AT2G14720.1 | Zm00001d046900_P003 | AT5G20500.1 | 23738689 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012390_P001 | Maize | cytosol | 14.08 | 96.67 |
| Zm00001d014303_P002 | Maize | plasma membrane | 93.37 | 93.21 |
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 14.89 | 91.09 |
| Os10t0346600-00 | Rice | plasma membrane | 89.16 | 87.32 |
| TraesCS1D01G131100.1 | Wheat | golgi | 87.54 | 85.47 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 87.06 | 85.13 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 87.54 | 84.8 |
| HORVU1Hr1G032780.9 | Barley | extracellular | 84.95 | 82.55 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 73.14 | 79.58 |
| GSMUA_Achr10P... | Banana | cytosol | 72.33 | 78.7 |
| KRH35666 | Soybean | endoplasmic reticulum | 74.6 | 73.06 |
| KRG91109 | Soybean | endoplasmic reticulum | 74.43 | 72.9 |
| CDX81459 | Canola | plasma membrane | 72.65 | 71.96 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 72.98 | 71.82 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 70.87 | 71.8 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 72.49 | 71.79 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 73.14 | 71.75 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 72.98 | 71.47 |
| Solyc01g107130.2.1 | Tomato | nucleus | 72.82 | 71.43 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 72.49 | 71.34 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 72.01 | 71.31 |
| KRH27575 | Soybean | endoplasmic reticulum | 72.17 | 71.02 |
| CDY65441 | Canola | plasma membrane | 72.49 | 71.0 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 72.49 | 71.0 |
| KRH77935 | Soybean | endoplasmic reticulum | 71.52 | 68.74 |
| Zm00001d052354_P005 | Maize | plasma membrane | 66.02 | 65.49 |
| Zm00001d005062_P003 | Maize | plasma membrane | 66.02 | 65.38 |
| Zm00001d022439_P001 | Maize | extracellular, plasma membrane, vacuole | 63.59 | 62.09 |
| Zm00001d029056_P002 | Maize | extracellular, plasma membrane, vacuole | 62.3 | 61.5 |
| Zm00001d047522_P002 | Maize | extracellular, plasma membrane, vacuole | 62.46 | 59.02 |
| Zm00001d046945_P001 | Maize | plasma membrane | 58.41 | 57.39 |
| Zm00001d005060_P001 | Maize | extracellular | 7.93 | 44.95 |
| Zm00001d053767_P001 | Maize | mitochondrion | 7.61 | 33.57 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | UniProt:A0A1D6GRX7 | ProteinID:AQK65819.1 |
| InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:PA_domain | PFAM:PF02225 | ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 |
| SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000221184F | EnsemblPlantsGene:Zm00001d014302 | EnsemblPlants:Zm00001d014302_P003 |
| EnsemblPlants:Zm00001d014302_T003 | SEG:seg | : | : | : | : |
Description
Vacuolar-sorting receptor 4
Coordinates
chr5:-:40157090..40174054
Molecular Weight (calculated)
68778.9 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.419
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSSHAMGA QAFRLLLLLL LAAAAAEARF VVEKNSLMVT SPTSLRGRHD SAIGNFGIPQ YGGSMAGAVV YPKDNAKACD DFDGRHPFRA KPGAMPTFLL
101: IDRGECLFAK KVWNAQNAGA SAVLVVDDKD EPLITMDLPR EDDEASKYIQ NITIPSALID EKFGDQLKKA VKDGEMVNVN LDWREAVPHP DDRVEYELWT
201: NSNDECGPKC DMLMNFLKEF KGAAQLLEKG GYSQFTPHYI TWYCPQAFVI SKQCKSQCIN HGRYCAPDPE QDFSTGYEGK DVVVENLRQL CVFKVANENK
301: KPWVWWDYVT DFHIRCPMKE KKYNKKCAET VIKSLGLDVK KVDKCMGDPN ADSDHPLLKM EQDAQIGKGS RGDVTILPTL VVNNRQYRGK LERKAVLKAI
401: CAGFEETTEP NVCLSDDIET NECLNDNGGC WQDKSANVTA CRDTFRGRVC ECPTFNGVQF KGDGYSNCEP AGPGKCLINH GGCWHETRNG KTFSACQESG
501: DGKCLCPAGF RGDGVKKCED IDECKEKKAC QCPECNCKDT WGGYDCTCSG DLLYIREHDT CISKTAVQAK AAWAAVWGIL IVVAVVAAGS YVVYKYRLRT
601: YPDSLICMKN HMYDQLDL
101: IDRGECLFAK KVWNAQNAGA SAVLVVDDKD EPLITMDLPR EDDEASKYIQ NITIPSALID EKFGDQLKKA VKDGEMVNVN LDWREAVPHP DDRVEYELWT
201: NSNDECGPKC DMLMNFLKEF KGAAQLLEKG GYSQFTPHYI TWYCPQAFVI SKQCKSQCIN HGRYCAPDPE QDFSTGYEGK DVVVENLRQL CVFKVANENK
301: KPWVWWDYVT DFHIRCPMKE KKYNKKCAET VIKSLGLDVK KVDKCMGDPN ADSDHPLLKM EQDAQIGKGS RGDVTILPTL VVNNRQYRGK LERKAVLKAI
401: CAGFEETTEP NVCLSDDIET NECLNDNGGC WQDKSANVTA CRDTFRGRVC ECPTFNGVQF KGDGYSNCEP AGPGKCLINH GGCWHETRNG KTFSACQESG
501: DGKCLCPAGF RGDGVKKCED IDECKEKKAC QCPECNCKDT WGGYDCTCSG DLLYIREHDT CISKTAVQAK AAWAAVWGIL IVVAVVAAGS YVVYKYRLRT
601: YPDSLICMKN HMYDQLDL
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Arabidopsis Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.