Factsheet for Solyc01g107130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g080960.2.1
Solyc11g069860.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	Solyc04g080960.2.1	AT4G16190.1	23738689
AT2G14720.1	Solyc11g069860.1.1	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	98.73	98.73
VIT_03s0091g00740.t01	Wine grape	plasma membrane	83.81	83.68
Zm00001d012390_P001	Maize	cytosol	11.75	82.22
CDY37219	Canola	extracellular, golgi, plasma membrane	80.32	81.09
KRG91109	Soybean	endoplasmic reticulum	81.11	80.98
KRH35666	Soybean	endoplasmic reticulum	81.11	80.98
CDX81459	Canola	plasma membrane	80.16	80.93
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	80.0	80.77
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	80.0	80.25
KRH27575	Soybean	endoplasmic reticulum	80.0	80.25
CDX93144	Canola	extracellular, plasma membrane, vacuole	77.62	80.16
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	79.52	79.78
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	79.84	79.71
CDY65441	Canola	plasma membrane	79.68	79.56
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	12.7	79.21
KRH77935	Soybean	endoplasmic reticulum	79.05	77.45
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	68.1	75.53
GSMUA_Achr10P...	Banana	cytosol	67.46	74.82
Os10t0346600-00	Rice	plasma membrane	73.02	72.9
Zm00001d014302_P003	Maize	plasma membrane	71.43	72.82
TraesCS1D01G131100.1	Wheat	golgi	71.9	71.56
TraesCS1B01G148200.1	Wheat	plasma membrane	71.59	71.36
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	71.9	71.0
Zm00001d014303_P002	Maize	plasma membrane	68.25	69.47
Solyc10g074980.1.1	Tomato	extracellular	68.73	69.39
Solyc09g015670.2.1	Tomato	plastid	68.1	69.08
HORVU1Hr1G032780.9	Barley	extracellular	67.78	67.14
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	61.43	60.66

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_CS	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:K4B2T0	InterPro:PA_domain	PFAM:PF02225	PFAM:PF12662	ScanProsite:PS01186	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g107130.2
EnsemblPlants:Solyc01g107130.2.1	TMHMM:TMhelix	UniParc:UPI0002767AAF	InterPro:cEGF	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:94746224..94752490

Molecular Weight (calculated)

69810.4 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.431

Length

630 amino acids

Sequence
(BLAST)

001: MGVSKTSKAT IFLGFLWLNL FQSVVGRFVV EKNSLRVVSP DDIKGTYDSA IGNFGIPQYG GSIPGTVVYP KENRKGCRNF EDSGTSFKSK SGAMPTFVLV
101: DRGDCFFALK VWNAQNAGAA AVLVADDVDE RLITMDSPEA DGSSAKYIEN ITIPSALIEK NFAEKLKKAV SAGEMVNVNL DWREAVPHPD DRVEYELWTS
201: SNDECGFKCD MLMKYVKDFK GAAQILEKGG YTQFTPHYIT WYCPQAFTVS KQCKSQCINH GRYCAPDPEQ DFSSGYEGKD VVVENLRQLC VFKVANETNK
301: PWVWWDYVTD FQIRCPMKEK KYNKECADAV IKSLGLDSRK IEKCMGDPNA DEDNPVLKEE QDAQIGKGTR GDVTILPTLV VNNRQYRGKL EKGAVLKAIC
401: AGFEETTEPA VCLSDDVETN ECLDNNGGCW KDKAANITAC KDTFRGRVCE CPVVDGVQFK GDGYSSCTAS GRGRCKLNNG GCWHDTRDGH TFSACVDNEE
501: GKCTCPPGFK GDGVKSCEDI DECREKKACQ CPECSCKNTW GSYECSCSGE LLYIRDHDTC ISKRAREVKS AWAAVWAILI GLAMAGGGAY LVYKYRLRSY
601: MDSEIRAIMA QYMPLDSQNE VQSHVNEGHA

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.