Factsheet for GSMUA_Achr6P16900_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P10400_001
GSMUA_Achr1P23530_001
GSMUA_Achr3P17220_001
GSMUA_Achr6P21090_001
GSMUA_Achr6P27980_001
GSMUA_Achr7P04990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	GSMUA_Achr3P17220_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr6P21090_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr6P27980_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr1P10400_001	AT5G20500.1	23738689
AT2G14720.1	GSMUA_Achr1P23530_001	AT5G20500.1	23738689
AT2G14720.1	GSMUA_Achr7P04990_001	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	90.67	90.67
Zm00001d012390_P001	Maize	cytosol	13.03	82.22
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	14.44	81.19
Os10t0346600-00	Rice	plasma membrane	83.27	74.96
Zm00001d014302_P003	Maize	plasma membrane	79.58	73.14
TraesCS1D01G131100.1	Wheat	golgi	80.99	72.67
TraesCS1B01G148200.1	Wheat	plasma membrane	80.63	72.47
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	80.99	72.1
KRG91109	Soybean	endoplasmic reticulum	78.35	70.52
KRH35666	Soybean	endoplasmic reticulum	77.82	70.05
VIT_03s0091g00740.t01	Wine grape	plasma membrane	77.64	69.89
Zm00001d014303_P002	Maize	plasma membrane	75.53	69.31
CDX81459	Canola	plasma membrane	75.18	68.43
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	75.88	68.41
CDY37219	Canola	extracellular, golgi, plasma membrane	75.0	68.27
HORVU1Hr1G032780.9	Barley	extracellular	76.41	68.24
Solyc01g107130.2.1	Tomato	nucleus	75.53	68.1
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	74.47	67.79
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	74.82	67.68
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	74.65	67.52
CDX93144	Canola	extracellular, plasma membrane, vacuole	72.18	67.21
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	74.3	66.88
CDY65441	Canola	plasma membrane	73.94	66.56
KRH27575	Soybean	endoplasmic reticulum	73.42	66.4
KRH77935	Soybean	endoplasmic reticulum	73.24	64.7
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	69.72	63.67
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	69.54	63.61
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	55.46	59.55
GSMUA_AchrUn_...	Banana	plasma membrane	57.39	55.44
GSMUA_Achr3P23680_001	Banana	plasma membrane	52.99	53.46
GSMUA_Achr7P03630_001	Banana	plasma membrane	54.05	30.34

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr6G16900_001	EnsemblPlants:GSMUA_Achr6P16900_001	EnsemblPlants:GSMUA_Achr6T16900_001	UniProt:M0T7N8	InterPro:PA_domain	PFAM:PF02225
ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	TMHMM:TMhelix
UniParc:UPI0002953C3B	SEG:seg	:	:	:	:

Description

Vacuolar-sorting receptor 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16900_001]

Coordinates

chr6:-:11278249..11286538

Molecular Weight (calculated)

63383.9 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.487

Length

568 amino acids

Sequence
(BLAST)

001: MAGAVVYPKE NARACDQFSR SDLFKPKAGA LPNFVLIDRG DCLFAKKVWN AQNAGASAVL VVDDKNEPLI TMDLPREDDE AAKYIENITI PSALIDKKFG
101: EQLKKAVRSG EMVNVNLDWR EAVPHPDDRV EYELWTNSND ECGTKCDMLM DFLKAFKGVA QLLEKGGYSQ FTPHYITWYC PQAFIISKQC KSQCINNGRY
201: CAPDPEQDFS TGYDGKDVVI ENLRQLCVFR VANESKRPWI WWDYVTDFHI RCPMKEKKYN KDCAETVMKS LGLDIKKVDQ CMGDPNADSE NPILKMEQDA
301: QVGTGSRGDV TILPTLIVNN RQYRGKLEKK AVLKAICAGF EENTEPPACL SDDIETNECL DNNGGCWQDK ASNITACKDT FRGRVCECPA FGGVQFKGDG
401: YNNCEAIGPG RCRINNGGCW QESRDGKTYS ACQESGDGKC QCPAGFEGDG VKACEDINEC KKKTACQCPD CSCKDTWGSY DCTCSGDLLY IKEHDTCISK
501: KASEAKVTWA AVWVLLIVLA VAAFGAYAIY KYRLRSYMDS EIRAIMAQYM PLDSQGEVPN HSHEEDHA

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.