Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr9P09250_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | GSMUA_Achr9P09250_001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P23680_001 | Banana | plasma membrane | 71.94 | 75.13 |
| Os06t0664300-01 | Rice | plasma membrane | 73.13 | 67.5 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 11.22 | 66.67 |
| Zm00001d046945_P001 | Maize | plasma membrane | 69.73 | 65.18 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 68.71 | 64.13 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 68.54 | 63.97 |
| TraesCS7D01G471300.1 | Wheat | golgi | 68.37 | 63.81 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 68.03 | 63.8 |
| Os04t0611400-01 | Rice | plasma membrane | 68.37 | 63.61 |
| KXG27024 | Sorghum | plasma membrane | 65.48 | 62.91 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 66.5 | 62.56 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 66.67 | 61.44 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 68.54 | 61.43 |
| KRH37180 | Soybean | plasma membrane | 64.97 | 61.22 |
| KRH12166 | Soybean | plasma membrane | 65.31 | 61.15 |
| CDY43178 | Canola | plasma membrane | 64.12 | 59.94 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 64.29 | 59.9 |
| CDY02347 | Canola | plasma membrane | 63.95 | 59.78 |
| Bra023151.1-P | Field mustard | plasma membrane | 63.95 | 59.78 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 64.8 | 59.44 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 64.8 | 59.35 |
| CDY50060 | Canola | plasma membrane | 63.44 | 59.3 |
| CDX78975 | Canola | plasma membrane | 63.44 | 59.11 |
| Bra013445.1-P | Field mustard | plasma membrane | 63.44 | 59.11 |
| TraesCS2D01G423700.1 | Wheat | golgi | 64.29 | 58.97 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 62.24 | 58.94 |
| AT4G20110.2 | Thale cress | plasma membrane | 62.59 | 58.6 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 61.05 | 57.72 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 55.44 | 57.39 |
| GSMUA_Achr10P... | Banana | cytosol | 54.76 | 56.69 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 50.68 | 56.33 |
| CDY12449 | Canola | cytosol | 27.55 | 55.86 |
| AT2G34940.1 | Thale cress | plasma membrane | 58.16 | 55.34 |
| KXG20551 | Sorghum | plasma membrane, plastid | 70.75 | 55.25 |
| Bra039877.1-P | Field mustard | cytosol | 30.78 | 54.85 |
| Bra021940.1-P | Field mustard | plasma membrane | 58.16 | 54.55 |
| CDY64650 | Canola | plasma membrane | 57.82 | 54.14 |
| CDY43647 | Canola | plasma membrane | 57.31 | 53.66 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 26.87 | 52.67 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 82.65 | 48.02 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 15.99 | 44.55 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 25.68 | 39.84 |
| HORVU2Hr1G099640.3 | Barley | extracellular | 18.71 | 17.11 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP22180_001 | EnsemblPlants:GSMUA_AchrUn_randomT22180_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG22180_001 | Gene3D:3.50.30.30 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:EGF_Ca-bd_CS | InterPro:PA_domain |
| PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | PFAM:PF02225 | ScanProsite:PS01187 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF52025 | TMHMM:TMhelix | UniParc:UPI000296F5C6 | UniProt:M0UBC6 | MapMan:22.5.2.1 | : |
Description
Vacuolar-sorting receptor 7 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22180_001]
Coordinates
chrchrUn_random:-:108176541..108180117
Molecular Weight (calculated)
65221.2 Da
IEP (calculated)
5.129
GRAVY (calculated)
-0.365
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLRRWLAL FAVLAAAAST GSVSGRFVVE KNGVRVIRPE HIRGRHDAAI ANFGVPHYGG TLLGVVMYPD KNTTACDAFD GTPFKFRSRR PVILLVDRGD
101: CYFALKAWNA QQAGAAAVLV ADNTDEPLLT MDNPEESQAS DYVDKISIPS AFINREFGET LKKALAKGTD QVVVKLDWRE SMPHPDERVE YEFWTNSNDE
201: CGPRCDEQMS FVKNFRGHAQ LLEKGGFTQF TPHYITWYCP EAFLLSKQCK AQCINRGRYC APDPEQDFDA GYDGKDVVIE NLRQLCVHRV ANETGLPLDK
301: ITKCMGDPDA DVENDVLRME QELQIGHDSR GDVTILPTLV INNVQYRGKL ERSAVLKAIC AGFKESTEPP VCLNGDIETN ECLRSNGGCW QDSKSNITAC
401: KDTFRGRLCV CPMVNNVQYQ GDGYTSCEAV GPGRCAMDNG GCWSETRDGQ TFSACSDSVL TGCRCPAGFH GDGYQCEDTD ECKEKLACSC PECSCKNTWG
501: GYDCKCKGNQ LYIKGEDTCI AKNMSRFGWI LTLLVLSCVA GAGIAGYLFY KYRLRSYMDS EIMAIMSQYM PLDNHNNEIQ PLRQDSTA
101: CYFALKAWNA QQAGAAAVLV ADNTDEPLLT MDNPEESQAS DYVDKISIPS AFINREFGET LKKALAKGTD QVVVKLDWRE SMPHPDERVE YEFWTNSNDE
201: CGPRCDEQMS FVKNFRGHAQ LLEKGGFTQF TPHYITWYCP EAFLLSKQCK AQCINRGRYC APDPEQDFDA GYDGKDVVIE NLRQLCVHRV ANETGLPLDK
301: ITKCMGDPDA DVENDVLRME QELQIGHDSR GDVTILPTLV INNVQYRGKL ERSAVLKAIC AGFKESTEPP VCLNGDIETN ECLRSNGGCW QDSKSNITAC
401: KDTFRGRLCV CPMVNNVQYQ GDGYTSCEAV GPGRCAMDNG GCWSETRDGQ TFSACSDSVL TGCRCPAGFH GDGYQCEDTD ECKEKLACSC PECSCKNTWG
501: GYDCKCKGNQ LYIKGEDTCI AKNMSRFGWI LTLLVLSCVA GAGIAGYLFY KYRLRSYMDS EIMAIMSQYM PLDNHNNEIQ PLRQDSTA
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.