Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0596900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | Os03t0596900-01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27024 | Sorghum | plasma membrane | 79.27 | 81.86 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 78.96 | 77.85 |
| TraesCS2D01G423700.1 | Wheat | golgi | 78.64 | 77.54 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 78.48 | 77.26 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 63.61 | 68.37 |
| Os06t0664300-01 | Rice | plasma membrane | 66.77 | 66.25 |
| KRH12166 | Soybean | plasma membrane | 62.82 | 63.22 |
| KRH37180 | Soybean | plasma membrane | 62.18 | 62.98 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 62.18 | 62.88 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 62.5 | 62.7 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 62.5 | 61.91 |
| AT4G20110.2 | Thale cress | plasma membrane | 60.76 | 61.15 |
| CDY50060 | Canola | plasma membrane | 60.76 | 61.05 |
| CDX78975 | Canola | plasma membrane | 60.92 | 61.01 |
| CDY43178 | Canola | plasma membrane | 60.6 | 60.89 |
| Bra013445.1-P | Field mustard | plasma membrane | 60.76 | 60.86 |
| Bra023151.1-P | Field mustard | plasma membrane | 60.44 | 60.73 |
| CDY02347 | Canola | plasma membrane | 60.44 | 60.73 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 59.34 | 59.43 |
| Os07t0680000-01 | Rice | plasma membrane | 58.39 | 58.95 |
| Os11t0116550-01 | Rice | extracellular, plasma membrane, vacuole | 58.07 | 58.63 |
| Os03t0335300-01 | Rice | plasma membrane | 56.65 | 57.01 |
| Os10t0346600-00 | Rice | plasma membrane | 56.65 | 56.74 |
| AT2G34940.1 | Thale cress | plasma membrane | 54.27 | 55.5 |
| Bra039877.1-P | Field mustard | cytosol | 28.8 | 55.15 |
| CDY12449 | Canola | cytosol | 25.16 | 54.83 |
| Bra021940.1-P | Field mustard | plasma membrane | 53.8 | 54.23 |
| CDY64650 | Canola | plasma membrane | 53.64 | 53.98 |
| CDY43647 | Canola | plasma membrane | 53.16 | 53.5 |
| Os12t0116000-01 | Rice | plastid | 57.59 | 50.0 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 59.49 | 37.15 |
| HORVU2Hr1G099640.3 | Barley | extracellular | 19.46 | 19.13 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:4336957 | ProteinID:BAF15752.1 | ProteinID:BAS90958.1 |
| InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os04g0611400 | EnsemblPlants:Os04t0611400-01 | InterPro:PA_domain | PFAM:PF02225 |
| ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF90 | UniProt:Q0JA85 | SMART:SM00179 | SUPFAM:SSF52025 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000DD9279 | RefSeq:XP_015635560.1 | RefSeq:XP_015635561.1 | SEG:seg |
Description
Similar to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f). (Os04t0611400-01)
Coordinates
chr4:+:31003855..31007535
Molecular Weight (calculated)
69103.9 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.225
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRLAAALC LAVAAVSVAV ATARFVVEKN SVKVLSPRSL RGRHEAAIAN YGVPDYGGTL TGVVVYPADA RLADGCRPFG EAAAKALRSR SRRPVVLLVD
101: RGGCYFALKT WHAQLAGAAA VLVADGVDEP LLTMDSPEEE TPDMAFLANI TVPSALVTKQ FGDALRAAAS AADDEVVVRL DWRESMPHPD ERVEYELWTN
201: SNDECGPRCD EQAAFVGAFR GHAQLLEKRG YALFTPHYIT WFCPDAFLET TQCKAQCVNR GRYCAPDPDG DLAAGYSGRD VVLENLRQLC VHRVANARNA
301: SWLWWDYVAD YHLRCSMKGD HYTRRCADDV AKSLGLPMDL IDECMGDPDA DVENDVLKTE QIVQVGHGTR GDVTILPTLV INNVQYRGKL ESTSVLKAIC
401: AGFKESTEPD VCLTPEMETD ECLNNNGGCW RDEKTNITAC KDTFRGRICQ CPVVDGVQYQ GDGYTHCKAV GPGRCAMNNG GCWKGTRDGK TFSACSDSDL
501: SGCKCPPGFK GDGLHCEDVD ECSEKLACSC PHCSCKNTWG SFDCSCHGNN LMYIKAEDTC IAKNMSAFGW LVTTLVLSCL AGAGVAGYVF YKYRLRRYMD
601: SEVMAIMSQY MPLEGQNGER LPLREEAQVE HA
101: RGGCYFALKT WHAQLAGAAA VLVADGVDEP LLTMDSPEEE TPDMAFLANI TVPSALVTKQ FGDALRAAAS AADDEVVVRL DWRESMPHPD ERVEYELWTN
201: SNDECGPRCD EQAAFVGAFR GHAQLLEKRG YALFTPHYIT WFCPDAFLET TQCKAQCVNR GRYCAPDPDG DLAAGYSGRD VVLENLRQLC VHRVANARNA
301: SWLWWDYVAD YHLRCSMKGD HYTRRCADDV AKSLGLPMDL IDECMGDPDA DVENDVLKTE QIVQVGHGTR GDVTILPTLV INNVQYRGKL ESTSVLKAIC
401: AGFKESTEPD VCLTPEMETD ECLNNNGGCW RDEKTNITAC KDTFRGRICQ CPVVDGVQYQ GDGYTHCKAV GPGRCAMNNG GCWKGTRDGK TFSACSDSDL
501: SGCKCPPGFK GDGLHCEDVD ECSEKLACSC PHCSCKNTWG SFDCSCHGNN LMYIKAEDTC IAKNMSAFGW LVTTLVLSCL AGAGVAGYVF YKYRLRRYMD
601: SEVMAIMSQY MPLEGQNGER LPLREEAQVE HA
001: MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG GFLIGSVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG
101: CYFALKAWHA QQAGAAAVLV ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDKRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW
301: WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSEPAICLN TGLETNECLE NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS DTRNGLTFSA CSDSVSTGCK
501: CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTL
101: CYFALKAWHA QQAGAAAVLV ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDKRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW
301: WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSEPAICLN TGLETNECLE NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS DTRNGLTFSA CSDSVSTGCK
501: CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTL
Arabidopsis Description
VSR7VACUOLAR SORTING RECEPTOR 7 [Source:UniProtKB/TrEMBL;Acc:F4JUS0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.