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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 7
  • golgi 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol, golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER99915 Sorghum plasma membrane 84.03 82.7
TraesCS2D01G105100.1 Wheat plasma membrane 83.55 82.23
TraesCS2B01G122400.1 Wheat golgi 83.71 82.0
TraesCS2A01G105500.1 Wheat golgi 83.55 81.72
Zm00001d022439_P001 Maize extracellular, plasma membrane, vacuole 82.43 81.52
Os03t0335300-01 Rice plasma membrane 79.87 79.62
GSMUA_Achr11P... Banana extracellular, golgi, plasma membrane 73.64 74.24
Os11t0116550-01 Rice extracellular, plasma membrane, vacuole 73.96 73.96
GSMUA_Achr7P22040_001 Banana extracellular, plasma membrane 72.52 72.99
GSMUA_AchrUn_... Banana extracellular, golgi, plasma membrane 60.06 71.08
Os10t0346600-00 Rice plasma membrane 65.18 64.66
Os12t0116000-01 Rice plastid 73.64 63.32
HORVU2Hr1G017770.3 Barley plastid 84.19 63.27
Os06t0664300-01 Rice plasma membrane 60.54 59.5
Os04t0611400-01 Rice plasma membrane 58.95 58.39
Protein Annotations
Gene3D:2.10.25.10MapMan:22.5.2.1Gene3D:3.40.30.10Gene3D:3.50.30.30EntrezGene:4344294EMBL:AK072667
ProteinID:BAC80001.1ProteinID:BAD31218.1ProteinID:BAF22557.1ProteinID:BAT03231.1ProteinID:EAZ41102.1InterPro:EGF_Ca-bd_CS
GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005575GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:Os07g0680000EnsemblPlants:Os07t0680000-01InterPro:PA_domainPFAM:PF02225ScanProsite:PS01187PANTHER:PTHR22765
PANTHER:PTHR22765:SF57UniProt:Q7XHX6SUPFAM:SSF52025SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00001B3AE1
RefSeq:XP_015644748.1SEG:seg::::
Description
VSR3, OsVSR3Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein). (Os07t0680000-01)
Coordinates
chr7:-:28809536..28819770
Molecular Weight (calculated)
69649.7 Da
IEP (calculated)
5.351
GRAVY (calculated)
-0.372
Length
626 amino acids
Sequence
(BLAST)
001: MTMMGCAVLL VVVASMAGEA AGRFVVEKNS LRVTSPAGLR GVYECAIGNF GMPQYGGTMH GVVVYPKANK KACRSFDDFD LSFKPKPGGL PIFLLVDRGD
101: CYFTTKGWNA QTAGAAAVLV ADDRLEPLIT MDSPESSGTD YIEKITVPSA LVTKKFGDDL KKALENGDMV NVLLDWRESL PHPDERVEYE FWTNSNDECG
201: AKCDMQMNFV RNFRGTAQVL EKRGYTQFTP HYITWYCPEA FVLSKQCRSQ CINHGRYCAP DPEQDFNIGY DGKDVVLQNL IQICLFKVGN ETHKPWVWWD
301: YVHDFSIRCP MKEKKYTREC ANGVIKSLGL DLERINKCVG DPEADEENPV LKAEQDAQIG QGSRGDVTIL PTLVVNNKQY RGKLEKSAVL KAVCSGFEET
401: TEPDVCLSQE IQTNECLESN GGCWQDKTNN FTACKDTFRG RVCECPIARG VKFVGDGYTH CEASGVGRCQ INNGGCWKET KNGKTVSACS NEESKGCKCP
501: PGFKGDGIKS CEDIDECKDK LFCQCKDCSC ENTWGSYECS CGGSNMLYMR EHDTCISKVA SSSVGWGFLW VIFFGLALAG IGAYAVYKYR LRSYMDSEIR
601: AIMAQYMPLE NQETPNQHRP VEHADI
Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)
001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
Arabidopsis Description
VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.