Factsheet for TraesCS2B01G122400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G105100.1	Wheat	plasma membrane	98.28	98.74
TraesCS2A01G105500.1	Wheat	golgi	97.5	97.34
Os07t0680000-01	Rice	plasma membrane	82.0	83.71
EER99915	Sorghum	plasma membrane	80.44	80.82
Zm00001d022439_P001	Maize	extracellular, plasma membrane, vacuole	79.34	80.09
TraesCS4B01G170000.1	Wheat	plasma membrane	74.49	76.28
HORVU2Hr1G017770.3	Barley	plastid	95.77	73.47
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	71.2	73.27
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	70.89	72.83
TraesCS5B01G145700.1	Wheat	golgi	71.2	72.34
TraesCS4B01G121300.2	Wheat	extracellular	70.74	72.32
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	58.69	70.89
TraesCS1B01G148200.1	Wheat	plasma membrane	61.97	62.66
TraesCS5B01G056400.1	Wheat	extracellular	45.7	62.13
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	56.02	56.83
TraesCS2B01G446100.1	Wheat	plasma membrane	55.24	54.98

Protein Annotations

EnsemblPlants:TraesCS2B01G122400.1	EnsemblPlantsGene:TraesCS2B01G122400	Gene3D:2.10.25.10	Gene3D:3.40.30.10	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EGF_Ca-bd_CS	InterPro:PA_domain	PANTHER:PTHR22765	PANTHER:PTHR22765:SF57
PFAM:PF02225	ScanProsite:PS01187	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52025	TIGR:cd00054
TIGR:cd02125	TMHMM:TMhelix	MapMan:22.5.2.1	:	:	:

Description

No Description!

Coordinates

chr2B:+:89554344..89558240

Molecular Weight (calculated)

70767.8 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.332

Length

639 amino acids

Sequence
(BLAST)

001: MGGRSSPAGW GRRAPPPPLL LLLVSVLALA TVVEGRFVVE KNSLRVTSPA GLRGVYECAI GNFGMPQYGG TMHGVVVYPK ANTKACKPFA DFGLSFNPKA
101: GGLPVFLLVD RGDCYFTTKG WNAQTAGAAA VLVADDRAEP LITMDTPESS GKEHLENITV PSALVSKRFG DDLKTALENG DMVNVLLDWR ESLPHPDERV
201: EYEFWTNSND ECGAKCDMQM SFVRDFRGVA QVLEQRGYTQ FAPHYITWYC PEAFVLSAQC RSQCINHGRY CAPDPEQDFT TGYDGKDVVV QNLIQICLFK
301: VANESRKPWL WWDYVHDFAI RCPMKEKKYT TDCAHGVIKS LGMDIDKITQ CVGDPDADED NPVLKAEQDA QIGHGARGDV TILPTFVVNN RQYRGKLDKR
401: AVLRAICSGF EETTEPDICL TQDIQTNQCL ENNGGCWLDK NTNFTACKDT FRGRVCECPV VNGVKFVGDG YTHCEASGVG RCQINNGGCW KETRNGKSVS
501: ACSNEQAKGC KCPQGFKGDG IHGCEDVDEC KERLFCQCKD CSCENTWGSY ECGCGGSNML YMREHDTCIS KVATSSVGWG FMWVIFFGLG FAGVGAYAVY
601: KYRLRSYMDS EIRAIMAQYM PLENQETSSH QRHVDHADI

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.