Factsheet for TraesCS5B01G145700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G145500.1	Wheat	plasma membrane	97.77	99.19
TraesCS5A01G146800.2	Wheat	golgi	98.89	97.95
HORVU5Hr1G046490.2	Barley	cytosol	86.01	96.09
Os11t0116550-01	Rice	extracellular, plasma membrane, vacuole	89.19	89.62
EES09132	Sorghum	plasma membrane	88.39	88.68
Zm00001d052354_P005	Maize	plasma membrane	87.12	87.96
Zm00001d005062_P003	Maize	plasma membrane	87.12	87.82
TraesCS4B01G121300.2	Wheat	extracellular	87.12	87.68
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	80.92	81.96
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	79.81	80.71
Os12t0116000-01	Rice	plastid	89.03	76.92
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	64.23	76.37
TraesCS4B01G170000.1	Wheat	plasma membrane	73.45	74.04
TraesCS2B01G122400.1	Wheat	golgi	72.34	71.2
TraesCS1B01G148200.1	Wheat	plasma membrane	66.61	66.3
TraesCS5B01G056400.1	Wheat	extracellular	49.28	65.96
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	57.71	57.62
TraesCS2B01G446100.1	Wheat	plasma membrane	57.71	56.54

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:EGF-like_Ca-bd_dom
InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:PA_domain	PFAM:PF02225
ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF47	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G145700	EnsemblPlants:TraesCS5B01G145700.1	TIGR:cd00054	TIGR:cd02125	SEG:seg

Description

No Description!

Coordinates

chr5B:+:273135432..273139152

Molecular Weight (calculated)

69852.0 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.430

Length

629 amino acids

Sequence
(BLAST)

001: MRLRSAPPAP PRLLLVLAVL LYGFCCCCEG RFVVEKNSLK VTAPDSLKGS YECAIGNFGV PQYGGTMVGV VAYPKSNRKA CKSFDDFDIS YKAKPGSLPT
101: FLLVDRGDCF FTKKAWNAQN AGVAAILVAD DKDEPLITMD TPEESGRADY LENITIPSAL ITKSFGDRLR KAVDGGHMVN VNLDWRESLP HPDERVEYEF
201: WTNSNDECGP KCDSQIDFVK SFKGPAQILE KKGYTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFSKGYD GKDVVVQNLR QVCVYKVAKE
301: NKKPWLWWDY VTDFAIRCPM KEKKYTKECA DGVIKSLGLD HKAIDKCIGD PNADEENPVL KAEQDAQIGK GARGDVTILP TLVINNRQYR GKLDKGAVLK
401: ALCAGFQETT EPAVCLSEDI QTNECLENNG GCWHDKAANI SACKDTFRGR VCECPVVKGV KFVGDGYTHC EASGSGRCEI NNGGCWKETR NGRTHSACTD
501: GGCKCPDGFK GDGVHKCEDV DECKERTACQ CKECKCKNTW GSYECGCGGG LLYMKEHDTC ISKDAGARVG WNFLWFLLFG LAAVGIAGYA VYKYRIRSYM
601: DSEIRAIMAQ YMPLDNQGEI PNHSHHIEM

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.