Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- plasma membrane 1
- mitochondrion 1
- cytosol 2
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0116550-01 | Rice | extracellular, plasma membrane, vacuole | 85.3 | 99.2 |
| Zm00001d005062_P003 | Maize | plasma membrane | 78.02 | 91.03 |
| EES09132 | Sorghum | plasma membrane | 78.3 | 90.91 |
| Zm00001d052354_P005 | Maize | plasma membrane | 77.2 | 90.21 |
| TraesCS5D01G145500.1 | Wheat | plasma membrane | 75.82 | 89.03 |
| TraesCS5B01G145700.1 | Wheat | golgi | 76.92 | 89.03 |
| HORVU5Hr1G046490.2 | Barley | cytosol | 68.82 | 88.99 |
| TraesCS4D01G119400.1 | Wheat | golgi | 75.69 | 88.16 |
| TraesCS4A01G193900.1 | Wheat | extracellular | 75.41 | 87.7 |
| HORVU4Hr1G022950.10 | Barley | extracellular | 75.14 | 87.52 |
| TraesCS5A01G146800.2 | Wheat | golgi | 76.1 | 87.24 |
| TraesCS4B01G121300.2 | Wheat | extracellular | 74.86 | 87.2 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 71.15 | 83.41 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 70.6 | 82.64 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 56.87 | 78.26 |
| Os03t0335300-01 | Rice | plasma membrane | 64.15 | 74.36 |
| Os07t0680000-01 | Rice | plasma membrane | 63.32 | 73.64 |
| Os10t0346600-00 | Rice | plasma membrane | 58.52 | 67.51 |
| Os06t0664300-01 | Rice | plasma membrane | 50.41 | 57.61 |
| Os04t0611400-01 | Rice | plasma membrane | 50.0 | 57.59 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | EntrezGene:4351323 | ProteinID:ABA96293.2 |
| EMBL:AK066617 | ProteinID:BAF29011.1 | ProteinID:BAT15604.1 | ProteinID:BAT15605.1 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:Os12g0116000 | EnsemblPlants:Os12t0116000-01 | InterPro:PA_domain | PFAM:PF02225 | ScanProsite:PS01187 | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF57 | UniProt:Q2QYK3 | SMART:SM00179 | SUPFAM:SSF52025 | TMHMM:TMhelix | UniParc:UPI0000D89BE2 |
| RefSeq:XP_015619939.1 | SEG:seg | : | : | : | : |
Description
Similar to PV72. (Os12t0116000-01);Similar to predicted protein. (Os12t0116000-02)
Coordinates
chr12:-:783597..788103
Molecular Weight (calculated)
80825.9 Da
IEP (calculated)
7.635
GRAVY (calculated)
-0.472
Length
728 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPWTRCSCC LTESGSLPSA CFTNSRKSRP LPKSHQRVHP KSIHESLPHS NCLPPPSKSN LSSHLRRFRH APSTPRSILS PPIRSNPQLG STNCKGLGAD
101: WSMGLRSPNS MLWLVLLVWA ALLCGSCHGR FVVEKNSLKV TSPSDMKGTY ECAIGNFGVP QYGGTMVGVV AYPKANKKAC KSFDDFDISY KAKPGSLPTF
201: LLVDRGDCFF TKKAWNAQNA GAAAILVADD KTEPLITMDT PEESGNTDYL ENITIPSALI TKSFGDKLKK AIDNGDMVNV NLDWRESLPH PDERVEYEFW
301: TNSNDECGPK CDSQIDFVKS FKGAAQVLEK KGYTQFTPHY ITWYCPDSFI LSKQCKSQCI NHGRYCAPDP EQDFSKGYDG KDVVVQNLRQ VCVYKVAKEH
401: GKPWLWWDYV TDFAIRCPMK EKKYTKECAD GVIKSLGLDH KAIDKCIADP DADKENPVLK AEQDAQIGKG SRGDVTILPT LVINNRQYRG KLDKGAVLKA
501: ICAGFRETTE PAVCLSEDIQ TNECLENNGG CWQDKAANIS ACKDTFRGRV CECPVVKGVK FVGDGYTHCE ASGSGHCEIN NGGCWKDSRH GRTYSACTND
601: GCKCPDGFKG DGVHKCEDID ECKERTACQC KECKCKNTWG SYECGCSGGL LYMKEHDTCI SKNAATEVGW NFLWVIFFGL VVAGIAGYAV YKYRIRRYMD
701: SEIRAIMAQY MPLDNQGDVP NHSHHIEL
101: WSMGLRSPNS MLWLVLLVWA ALLCGSCHGR FVVEKNSLKV TSPSDMKGTY ECAIGNFGVP QYGGTMVGVV AYPKANKKAC KSFDDFDISY KAKPGSLPTF
201: LLVDRGDCFF TKKAWNAQNA GAAAILVADD KTEPLITMDT PEESGNTDYL ENITIPSALI TKSFGDKLKK AIDNGDMVNV NLDWRESLPH PDERVEYEFW
301: TNSNDECGPK CDSQIDFVKS FKGAAQVLEK KGYTQFTPHY ITWYCPDSFI LSKQCKSQCI NHGRYCAPDP EQDFSKGYDG KDVVVQNLRQ VCVYKVAKEH
401: GKPWLWWDYV TDFAIRCPMK EKKYTKECAD GVIKSLGLDH KAIDKCIADP DADKENPVLK AEQDAQIGKG SRGDVTILPT LVINNRQYRG KLDKGAVLKA
501: ICAGFRETTE PAVCLSEDIQ TNECLENNGG CWQDKAANIS ACKDTFRGRV CECPVVKGVK FVGDGYTHCE ASGSGHCEIN NGGCWKDSRH GRTYSACTND
601: GCKCPDGFKG DGVHKCEDID ECKERTACQC KECKCKNTWG SYECGCSGGL LYMKEHDTCI SKNAATEVGW NFLWVIFFGL VVAGIAGYAV YKYRIRRYMD
701: SEIRAIMAQY MPLDNQGDVP NHSHHIEL
001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
Arabidopsis Description
VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.