Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G119400.1 | Wheat | golgi | 97.12 | 97.12 |
| TraesCS4A01G193900.1 | Wheat | extracellular | 96.8 | 96.65 |
| HORVU4Hr1G022950.10 | Barley | extracellular | 95.68 | 95.68 |
| Os11t0116550-01 | Rice | extracellular, plasma membrane, vacuole | 87.36 | 87.22 |
| Zm00001d052354_P005 | Maize | plasma membrane | 86.88 | 87.16 |
| TraesCS5B01G145700.1 | Wheat | golgi | 87.68 | 87.12 |
| EES09132 | Sorghum | plasma membrane | 87.2 | 86.92 |
| Zm00001d005062_P003 | Maize | plasma membrane | 86.56 | 86.7 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 79.04 | 79.55 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 78.4 | 78.78 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 64.0 | 75.61 |
| Os12t0116000-01 | Rice | plastid | 87.2 | 74.86 |
| TraesCS4B01G170000.1 | Wheat | plasma membrane | 72.64 | 72.76 |
| TraesCS2B01G122400.1 | Wheat | golgi | 72.32 | 70.74 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 66.24 | 65.51 |
| TraesCS5B01G056400.1 | Wheat | extracellular | 49.12 | 65.32 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 58.08 | 57.62 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 57.6 | 56.07 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G121300.2 | EnsemblPlantsGene:TraesCS4B01G121300 | Gene3D:2.10.25.10 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | InterPro:PA_domain | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF57 | PFAM:PF02225 | ScanProsite:PS01187 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00179 |
| SUPFAM:SSF52025 | TIGR:cd00054 | TIGR:cd02125 | TMHMM:TMhelix | MapMan:22.5.2.1 | : |
Description
No Description!
Coordinates
chr4B:-:142928719..142932817
Molecular Weight (calculated)
69280.1 Da
IEP (calculated)
5.365
GRAVY (calculated)
-0.402
Length
625 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPPPLLL TLVWAAALLW CGGCDARFVV EKNSLRVTAP EALKGAYECA IGNFGVPQYG GTMVGVVAYP KANRKACKGF DDFDVSFKAR PGALPTFLLV
101: DRGDCYFTKK AWNAQNAGAA AILVADDRDE PLITMDTPEE SGRVEYLENI TIPSTLISKS FGDRLKKAID NGEMVNVNLD WRESLPHPDE RVEYEFWTNS
201: NDECGPKCDS QIDFVKSFKG AAQILEKKGY TQFTPHYITW YCPEAYTLSK QCKSQCINHG RYCAPDPDQD FSKGYDGKDV VVQNLRQVCV YKVAKESKKP
301: WLWWDYVTDF AVRCPMKEKK YTKECADGVV KSLGLDHKAI DKCIGDPDAD EENPILKAEQ DAQIGNGSRG DVTILPTLVI NNRQYRGKLD KAAVLKALCA
401: GFRETTEPAV CLSEDIQTNE CLENNGGCWQ DKAANITACK DTFRGKVCEC PVVKGVKFVG DGYTHCEASG GGRCEINNGG CWKETMNGRT YSACTADSCK
501: CPDGFKGDGI HECEDIDECK ERTACQCKEC NCKNTWGSYE CGCSGGLLYM KEHDTCISKS TAAQVGWNFL WVVFFGLAAT GIAGYAVYKY RIRRYMDSEI
601: RAIMAQYMPL ESQGEIPSNA HHIEM
101: DRGDCYFTKK AWNAQNAGAA AILVADDRDE PLITMDTPEE SGRVEYLENI TIPSTLISKS FGDRLKKAID NGEMVNVNLD WRESLPHPDE RVEYEFWTNS
201: NDECGPKCDS QIDFVKSFKG AAQILEKKGY TQFTPHYITW YCPEAYTLSK QCKSQCINHG RYCAPDPDQD FSKGYDGKDV VVQNLRQVCV YKVAKESKKP
301: WLWWDYVTDF AVRCPMKEKK YTKECADGVV KSLGLDHKAI DKCIGDPDAD EENPILKAEQ DAQIGNGSRG DVTILPTLVI NNRQYRGKLD KAAVLKALCA
401: GFRETTEPAV CLSEDIQTNE CLENNGGCWQ DKAANITACK DTFRGKVCEC PVVKGVKFVG DGYTHCEASG GGRCEINNGG CWKETMNGRT YSACTADSCK
501: CPDGFKGDGI HECEDIDECK ERTACQCKEC NCKNTWGSYE CGCSGGLLYM KEHDTCISKS TAAQVGWNFL WVVFFGLAAT GIAGYAVYKY RIRRYMDSEI
601: RAIMAQYMPL ESQGEIPSNA HHIEM
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
Arabidopsis Description
VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.