Factsheet for TraesCS4A01G193900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G119400.1	Wheat	golgi	96.96	97.12
TraesCS4B01G121300.2	Wheat	extracellular	96.65	96.8
HORVU4Hr1G022950.10	Barley	extracellular	95.69	95.84
Os11t0116550-01	Rice	extracellular, plasma membrane, vacuole	87.86	87.86
EES09132	Sorghum	plasma membrane	87.86	87.72
Zm00001d005062_P003	Maize	plasma membrane	87.22	87.5
Zm00001d052354_P005	Maize	plasma membrane	86.9	87.32
TraesCS5A01G146800.2	Wheat	golgi	87.06	85.83
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	79.07	79.71
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	78.75	79.26
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	64.22	75.99
Os12t0116000-01	Rice	plastid	87.7	75.41
TraesCS2A01G105500.1	Wheat	golgi	72.68	71.09
TraesCS4A01G135100.3	Wheat	plasma membrane	72.04	67.72
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	66.45	65.2
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	9.74	61.62
TraesCS5A01G050500.1	Wheat	extracellular, mitochondrion	48.4	58.84
TraesCS5A01G050400.2	Wheat	extracellular, plasma membrane	47.12	58.53
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	57.67	57.58
TraesCS2A01G425800.2	Wheat	mitochondrion	57.35	56.01
TraesCS4A01G252300.1	Wheat	extracellular, mitochondrion	10.06	43.45
TraesCS6A01G310600.1	Wheat	cytosol	25.56	42.22
TraesCS7A01G436000.1	Wheat	mitochondrion	13.42	39.81

Protein Annotations

EnsemblPlants:TraesCS4A01G193900.1	EnsemblPlantsGene:TraesCS4A01G193900	Gene3D:2.10.25.10	Gene3D:3.40.30.10	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	InterPro:PA_domain	PANTHER:PTHR22765
PANTHER:PTHR22765:SF57	PFAM:PF02225	ScanProsite:PS01187	SEG:seg	SignalP:SignalP-noTM	SMART:SM00179
SUPFAM:SSF52025	TIGR:cd00054	TIGR:cd02125	TMHMM:TMhelix	MapMan:22.5.2.1	:

Description

No Description!

Coordinates

chr4A:+:475902731..475906968

Molecular Weight (calculated)

69405.4 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.379

Length

626 amino acids

Sequence
(BLAST)

001: MASPPPPPLL LTLVWAAALL WCGGCDARFV VEKNSLRVTA PEALKGAYEC AIGNFGVPQY GGTMVGVVAY PKANRKACKG FDEFDVSFKA RPGALPTFLL
101: VDRGDCYFAK KAWNAQNAGA VAILVADDRD EPLITMDTPE ESGRVEYLEN ITIPSALISK SFGDRLKKAI DNGDMVNVNL DWRESLPHPD ERVEYEFWTN
201: SNDECGPKCN SQIDFVKSFK GAAQVLEKKG YTQFTPHYIT WYCPEAYTLS KQCKSQCINH GRYCAPDPDQ DFSKGYDGKD VVVQNLRQVC VYKVAKESKK
301: PWLWWDYVTD FAVRCPMKEK KYTKECADGV IKSLGLDHKA IDKCIGDPDA DEENPILKAE QDAQIGKGSR GDVTILPTLV INNRQYRGKL DKAAVLKALC
401: AGFRETTEPA VCLSEDIQTN ECLENNGGCW QDKAANITAC KDTFRGKVCE CPVVEGVKFV GDGYTHCEAS GAGRCQINNG GCWKETMNGR TYSACTADGC
501: KCPDGFKGDG IHKCEDIDEC KERTACQCKE CNCKNTWGSY ECGCSGGLLY MKEHDTCISK SAAAQVGWNF LWVVFFGLAA VGIAGYAVYK YWIRRYMDSE
601: IRAIMAQYMP LENQGEIPSH SHHIEM

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.