Factsheet for TraesCS4A01G135100.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G170000.1	Wheat	plasma membrane	92.79	99.04
TraesCS4D01G172100.1	Wheat	golgi	92.64	98.88
Os03t0335300-01	Rice	plasma membrane	80.78	85.67
Zm00001d029056_P002	Maize	extracellular, plasma membrane, vacuole	79.28	84.34
EER94904	Sorghum	extracellular, plasma membrane, vacuole	79.13	83.78
HORVU4Hr1G050280.9	Barley	plastid	80.78	82.01
Zm00001d047522_P002	Maize	extracellular, plasma membrane, vacuole	78.53	79.97
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	69.52	74.56
TraesCS2A01G105500.1	Wheat	golgi	71.32	74.22
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	68.77	73.63
TraesCS5A01G146800.2	Wheat	golgi	69.22	72.6
TraesCS4A01G193900.1	Wheat	extracellular	67.72	72.04
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	55.56	69.94
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	60.66	63.32
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	53.3	56.62
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	8.26	55.56
TraesCS5A01G050500.1	Wheat	extracellular, mitochondrion	42.79	55.34
TraesCS5A01G050400.2	Wheat	extracellular, plasma membrane	41.44	54.76
TraesCS2A01G425800.2	Wheat	mitochondrion	52.25	54.29
TraesCS6A01G310600.1	Wheat	cytosol	23.12	40.63
TraesCS7A01G436000.1	Wheat	mitochondrion	12.16	38.39
TraesCS4A01G252300.1	Wheat	extracellular, mitochondrion	8.26	37.93

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:EGF-like_Ca-bd_dom
InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:PA_domain	PFAM:PF02225
ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF47	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G135100	EnsemblPlants:TraesCS4A01G135100.3	TIGR:cd00054	TIGR:cd02125	SEG:seg

Description

No Description!

Coordinates

chr4A:+:185429731..185436158

Molecular Weight (calculated)

73664.2 Da

IEP (calculated)

5.246

GRAVY (calculated)

-0.368

Length

666 amino acids

Sequence
(BLAST)

001: MMGPVWWAVL VLLAMADAVA GRFVVEKNSV QVTSPDSLKG KYECAIGNFG LPQYGGTLQG WVVYPKDNKQ ACKEFDVSFK GHKSGARPNF VLIDRGECFF
101: TTKAWNAQLA GAAAILVVDS KDEPLITMDN PEDTGTKHLE NITIPSVLIT KKLGEDLKKS AENGDMVSVL LDWRESLPHP DERVEYEFWT NSNDECGPKC
201: DMQMDFVKSF RGTAQVLEQK GYTQFTPHYI TWYCPEAFTV SKQCKSQCIN HGRYCAPDPE QDFSKGYDGK DVVVQNLHQV CVFKVANDTG KPWLWWDYVH
301: DFAIRCPMKE KKYTHECASH VIKSLGLDMD KINKCVGDPE ADEENPILKA EQDAQIGHGK RGDVTILPTL VVNNRQYRGK LDKGAVLKAI CSGFEETTEP
401: AICLSEDVQT NECLENHGGC WVDTANNVTA CKDTFRGRVC ECPIVKGVKF VGDGYTNCEA SGVGRCEINN GGCWKETKNG KTISACSHEE SEGCKCPQGF
501: KGDGVKSCED IDECKAKSAC QCNGCSCENT WGSYECSCGG NNMLYMREQD TCINPKWSDP SPDPVQAGAT CTGLPFVYGE LLHVLCLALS MYSSKGKQAA
601: SSVGWSFMWV IFFGLVFAGV GAYAVYKYRL RSYMDSEIRA IMAQYMPLDS QEGANQQQHV AHAGDI

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.