Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
golgi: 25769308 unclear: 25769308 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G170000.1 | Wheat | plasma membrane | 99.52 | 99.52 |
| TraesCS4A01G135100.3 | Wheat | plasma membrane | 98.88 | 92.64 |
| Os03t0335300-01 | Rice | plasma membrane | 86.22 | 85.67 |
| Zm00001d029056_P002 | Maize | extracellular, plasma membrane, vacuole | 84.78 | 84.5 |
| EER94904 | Sorghum | extracellular, plasma membrane, vacuole | 84.29 | 83.62 |
| HORVU4Hr1G050280.9 | Barley | plastid | 86.38 | 82.16 |
| Zm00001d047522_P002 | Maize | extracellular, plasma membrane, vacuole | 84.13 | 80.28 |
| TraesCS2D01G105100.1 | Wheat | plasma membrane | 76.6 | 75.16 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 74.68 | 75.04 |
| TraesCS5D01G145500.1 | Wheat | plasma membrane | 73.72 | 74.19 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 73.72 | 73.95 |
| TraesCS4D01G119400.1 | Wheat | golgi | 73.24 | 73.12 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 59.78 | 70.51 |
| TraesCS1D01G131100.1 | Wheat | golgi | 64.9 | 63.98 |
| TraesCS5D01G061200.2 | Wheat | extracellular | 47.44 | 57.25 |
| TraesCS7D01G471300.1 | Wheat | golgi | 57.69 | 57.14 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 27.4 | 57.0 |
| TraesCS2D01G423700.1 | Wheat | golgi | 55.29 | 53.82 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G172100.1 | EnsemblPlantsGene:TraesCS4D01G172100 | Gene3D:2.10.25.10 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | InterPro:PA_domain | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF47 | PFAM:PF02225 | ScanProsite:PS01187 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00179 |
| SUPFAM:SSF52025 | TIGR:cd00054 | TIGR:cd02125 | TMHMM:TMhelix | MapMan:22.5.2.1 | : |
Description
No Description!
Coordinates
chr4D:-:299314914..299320917
Molecular Weight (calculated)
69254.9 Da
IEP (calculated)
5.329
GRAVY (calculated)
-0.407
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGPAWWAVL LLLAMADAVA GRFVVEKNSV QVTSPESLKG KYECAIGNFG LPQYGGTLQG WVVYPKDNRQ ACKEFDVSFK GHKSGARPNF VLIDRGECFF
101: TTKAWNAQLA GAAAILVVDS KDEPLITMDN PEDTGTKHLE NITIPSVLIT KKLGEDLKKS AENGDMVSVL LDWRESLPHP DERVEYEFWT NSNDECGPKC
201: DMQMDFVKSF RGTAQVLEQK GYTQFTPHYI TWYCPEAFTV SKQCKSQCIN HGRYCAPDPE QDFSKGYDGK DVVVQNLHQV CVFKVANDTG KPWLWWDYVH
301: DFAIRCPMKE KKYTHECASH VIKSLGLDLD KINKCVGDPE ADEENPILKA EQDAQIGHGK RGDVTILPTL VVNNRQYRGK LDKGAVLKAI CSGFEETTEP
401: AICLSEDVQT NECLENHGGC WVDKANNVTA CKDTFRGRVC ECPIVKGVKF VGDGYTNCEA SGVGRCEINN GGCWKETKNG KTISACSHEE SEGCKCPQGF
501: KGDGVKSCED IDECKAKSAC QCNGCSCENT WGSYECSCGG NNMLYMREQD TCISKQAASS VGWSFMWVIF FGLVFAGVGA YAVYKYRLRS YMDSEIRAIM
601: AQYMPLDSQE GANQQQHVAH AGDI
101: TTKAWNAQLA GAAAILVVDS KDEPLITMDN PEDTGTKHLE NITIPSVLIT KKLGEDLKKS AENGDMVSVL LDWRESLPHP DERVEYEFWT NSNDECGPKC
201: DMQMDFVKSF RGTAQVLEQK GYTQFTPHYI TWYCPEAFTV SKQCKSQCIN HGRYCAPDPE QDFSKGYDGK DVVVQNLHQV CVFKVANDTG KPWLWWDYVH
301: DFAIRCPMKE KKYTHECASH VIKSLGLDLD KINKCVGDPE ADEENPILKA EQDAQIGHGK RGDVTILPTL VVNNRQYRGK LDKGAVLKAI CSGFEETTEP
401: AICLSEDVQT NECLENHGGC WVDKANNVTA CKDTFRGRVC ECPIVKGVKF VGDGYTNCEA SGVGRCEINN GGCWKETKNG KTISACSHEE SEGCKCPQGF
501: KGDGVKSCED IDECKAKSAC QCNGCSCENT WGSYECSCGG NNMLYMREQD TCISKQAASS VGWSFMWVIF FGLVFAGVGA YAVYKYRLRS YMDSEIRAIM
601: AQYMPLDSQE GANQQQHVAH AGDI
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
Arabidopsis Description
VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.