Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G137900.1 | |
TraesCS4B01G148100.1 | |
TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G34940.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
AT2G34940.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
AT2G34940.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 97.62 | 97.62 |
TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 97.14 | 97.61 |
HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 96.35 | 92.53 |
TraesCS7D01G145700.2 | Wheat | cytosol | 40.32 | 84.67 |
Zm00001d046945_P001 | Maize | plasma membrane | 81.75 | 81.88 |
Os06t0664300-01 | Rice | plasma membrane | 82.7 | 81.79 |
KXG20551 | Sorghum | plasma membrane, plastid | 82.38 | 68.92 |
GSMUA_AchrUn_... | Banana | plasma membrane | 63.81 | 68.37 |
TraesCS2D01G423700.1 | Wheat | golgi | 67.62 | 66.46 |
KRH37180 | Soybean | plasma membrane | 65.71 | 66.35 |
KRH12166 | Soybean | plasma membrane | 65.87 | 66.08 |
VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 65.71 | 65.71 |
PGSC0003DMT400018916 | Potato | plasma membrane | 64.29 | 64.8 |
Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 64.6 | 63.79 |
Bra023151.1-P | Field mustard | plasma membrane | 62.06 | 62.16 |
CDY02347 | Canola | plasma membrane | 62.06 | 62.16 |
CDY43178 | Canola | plasma membrane | 61.9 | 62.0 |
AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 62.06 | 61.97 |
CDX78975 | Canola | plasma membrane | 61.43 | 61.33 |
Bra013445.1-P | Field mustard | plasma membrane | 61.11 | 61.01 |
CDY50060 | Canola | plasma membrane | 60.79 | 60.89 |
AT4G20110.2 | Thale cress | plasma membrane | 60.48 | 60.67 |
TraesCS4D01G119400.1 | Wheat | golgi | 58.41 | 58.88 |
Bra039877.1-P | Field mustard | cytosol | 30.79 | 58.79 |
TraesCS5D01G145500.1 | Wheat | plasma membrane | 57.62 | 58.55 |
TraesCS4D01G172100.1 | Wheat | golgi | 57.14 | 57.69 |
CDY12449 | Canola | cytosol | 26.51 | 57.59 |
AT2G34940.1 | Thale cress | plasma membrane | 56.35 | 57.44 |
TraesCS1D01G131100.1 | Wheat | golgi | 56.19 | 55.92 |
CDY64650 | Canola | plasma membrane | 55.71 | 55.89 |
Bra021940.1-P | Field mustard | plasma membrane | 55.56 | 55.82 |
TraesCS2D01G105100.1 | Wheat | plasma membrane | 56.19 | 55.66 |
CDY43647 | Canola | plasma membrane | 55.24 | 55.41 |
TraesCS5D01G061200.2 | Wheat | extracellular | 39.05 | 47.58 |
GSMUA_Achr7P03630_001 | Banana | plasma membrane | 59.37 | 36.96 |
Protein Annotations
EnsemblPlants:TraesCS7D01G471300.1 | EnsemblPlantsGene:TraesCS7D01G471300 | Gene3D:2.10.25.10 | Gene3D:3.50.30.30 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005509 | InterPro:EGF_Ca-bd_CS | InterPro:PA_domain | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | PFAM:PF02225 |
ScanProsite:PS01187 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52025 | TIGR:cd00054 | TMHMM:TMhelix |
MapMan:22.5.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:584853494..584857482
Molecular Weight (calculated)
69312.1 Da
IEP (calculated)
6.099
GRAVY (calculated)
-0.351
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGARPF LAVVMAVAVL AAMVAPARGR FVVEKSSVRV LAPEHIRGHH DAAIGNFGVP DYGGTLTGVV LYPAKKATGC AEFPAKFKSK SGRPVVLLLD
101: RGECYFALKS WNAQQAGAAA VLIADTVDEQ LLTMDTPEAS PDTRYLDKLN IPSALVNRAF GESLKRMAEK ADAEGEVVVK LDWRESMPHP DERVEYELWT
201: NSNDECGPRC DEQAAFVKSF RGHAQILERG GYARFTPHYI TWYCPEAFRL TRQCQSQCIN HGRYCAPDPE EDFGEGYEGK QVVVENLRQL CVHRVANESG
301: RPWAWWDFAM DYKLRCSMKE KKYSKACAEE VVASLGLPLE KVLACMGDPD ADADNAVLSK EQEDQIGRGS RGDVTILPTL VINDVQYRGK LERTAVLKAV
401: CAGFKEGTEP QVCLSHDMET NECLHRNGGC WRDEATNVTA CRDTYRGRVC ECPVVNGVRY DGDGYTHCKA VGPGRCALNH GGCWSETKGE RTFSACSDTA
501: LSGCRCPAGF QGDGHKCEDL DECKDKLACT CPDCHCKNTW GSYECGCRGN QVYIRGEDVC VANSMSRFGW LVALLAVSCA AGLGVAGFVF YKYRLRSYMD
601: SEIMAIMSQY MPLDSQNNEH QPLRQHAPDA
101: RGECYFALKS WNAQQAGAAA VLIADTVDEQ LLTMDTPEAS PDTRYLDKLN IPSALVNRAF GESLKRMAEK ADAEGEVVVK LDWRESMPHP DERVEYELWT
201: NSNDECGPRC DEQAAFVKSF RGHAQILERG GYARFTPHYI TWYCPEAFRL TRQCQSQCIN HGRYCAPDPE EDFGEGYEGK QVVVENLRQL CVHRVANESG
301: RPWAWWDFAM DYKLRCSMKE KKYSKACAEE VVASLGLPLE KVLACMGDPD ADADNAVLSK EQEDQIGRGS RGDVTILPTL VINDVQYRGK LERTAVLKAV
401: CAGFKEGTEP QVCLSHDMET NECLHRNGGC WRDEATNVTA CRDTYRGRVC ECPVVNGVRY DGDGYTHCKA VGPGRCALNH GGCWSETKGE RTFSACSDTA
501: LSGCRCPAGF QGDGHKCEDL DECKDKLACT CPDCHCKNTW GSYECGCRGN QVYIRGEDVC VANSMSRFGW LVALLAVSCA AGLGVAGFVF YKYRLRSYMD
601: SEIMAIMSQY MPLDSQNNEH QPLRQHAPDA
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.