Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G122400.1 | Wheat | golgi | 98.74 | 98.28 |
| TraesCS2A01G105500.1 | Wheat | golgi | 98.58 | 97.97 |
| Os07t0680000-01 | Rice | plasma membrane | 82.23 | 83.55 |
| EER99915 | Sorghum | plasma membrane | 80.82 | 80.82 |
| Zm00001d022439_P001 | Maize | extracellular, plasma membrane, vacuole | 79.56 | 79.94 |
| TraesCS4D01G172100.1 | Wheat | golgi | 75.16 | 76.6 |
| HORVU2Hr1G017770.3 | Barley | plastid | 96.07 | 73.35 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 71.54 | 73.27 |
| TraesCS5D01G145500.1 | Wheat | plasma membrane | 71.38 | 73.23 |
| TraesCS4D01G119400.1 | Wheat | golgi | 71.86 | 73.12 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 71.23 | 72.83 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 58.96 | 70.89 |
| TraesCS1D01G131100.1 | Wheat | golgi | 62.26 | 62.56 |
| TraesCS5D01G061200.2 | Wheat | extracellular | 47.33 | 58.22 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 26.73 | 56.67 |
| TraesCS7D01G471300.1 | Wheat | golgi | 55.66 | 56.19 |
| TraesCS2D01G423700.1 | Wheat | golgi | 55.35 | 54.91 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G105100.1 | EnsemblPlantsGene:TraesCS2D01G105100 | Gene3D:2.10.25.10 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EGF_Ca-bd_CS | InterPro:PA_domain | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF57 |
| PFAM:PF02225 | ScanProsite:PS01187 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52025 | TIGR:cd00054 |
| TIGR:cd02125 | TMHMM:TMhelix | MapMan:22.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:56578761..56583982
Molecular Weight (calculated)
70625.6 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.343
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGRSPPSAG WRRWTPPPLL LLLLVSVLAV EGRFVVEKNS LRVTSPAALR GVYECAIGNF GMPQYGGTMH GVVVYPKANT KACKPFADFG LSFNPKAGGL
101: PVFLLVDRGD CYFTTKGWNA QTAGAAAVLV ADDRAEPLIT MDTPESSGKE HLENITVPSA LVSKRFGDDL KGALENGDMV NVLLDWRESL PHPDERVEYE
201: FWTNSNDECG AKCDMQMSFV RDFRGVAQVL EQRGYTQFAP HYITWYCPEA FVLSAQCRSQ CINHGRYCAP DPEQDFTTGY DGKDVVVQNL IQICLFKVAN
301: ESRKPWLWWD YVHDFAIRCP MKEKKYTTDC AHGVIKSLGM DIDKITQCVG DPDADEDNPV LKAEQDAQIG HGARGDVTIL PTFVVNNRQY RGKLDKRAVL
401: RAICSGFEET TEPDICLTQD IQTNQCLENN GGCWLDKNTN FTACKDTFRG RVCECPVVNG VKFVGDGYTH CEASGVGRCQ INNGGCWKET RNGKSVSACS
501: NEQAKGCKCP QGFKGDGIHG CEDVDECKER LFCQCKDCSC ENTWGSYECG CGGSNMLYMR EHDTCISKVA TSSVGWGFMW VIFFGLGFAG VGAYAVYKYR
601: LRSYMDSEIR AIMAQYMPLE NQETSSHQRH VDHADI
101: PVFLLVDRGD CYFTTKGWNA QTAGAAAVLV ADDRAEPLIT MDTPESSGKE HLENITVPSA LVSKRFGDDL KGALENGDMV NVLLDWRESL PHPDERVEYE
201: FWTNSNDECG AKCDMQMSFV RDFRGVAQVL EQRGYTQFAP HYITWYCPEA FVLSAQCRSQ CINHGRYCAP DPEQDFTTGY DGKDVVVQNL IQICLFKVAN
301: ESRKPWLWWD YVHDFAIRCP MKEKKYTTDC AHGVIKSLGM DIDKITQCVG DPDADEDNPV LKAEQDAQIG HGARGDVTIL PTFVVNNRQY RGKLDKRAVL
401: RAICSGFEET TEPDICLTQD IQTNQCLENN GGCWLDKNTN FTACKDTFRG RVCECPVVNG VKFVGDGYTH CEASGVGRCQ INNGGCWKET RNGKSVSACS
501: NEQAKGCKCP QGFKGDGIHG CEDVDECKER LFCQCKDCSC ENTWGSYECG CGGSNMLYMR EHDTCISKVA TSSVGWGFMW VIFFGLGFAG VGAYAVYKYR
601: LRSYMDSEIR AIMAQYMPLE NQETSSHQRH VDHADI
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
Arabidopsis Description
VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.