Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G137900.1 | |
TraesCS4B01G148100.1 | |
TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G34940.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
AT2G34940.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
AT2G34940.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 24.0 | 72.73 |
TraesCS6A01G310600.1 | Wheat | cytosol | 55.33 | 43.8 |
TraesCS7D01G471300.1 | Wheat | golgi | 84.67 | 40.32 |
TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 83.67 | 39.84 |
HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 83.67 | 38.26 |
Zm00001d046945_P001 | Maize | plasma membrane | 75.33 | 35.93 |
Os06t0664300-01 | Rice | plasma membrane | 76.0 | 35.79 |
KRH37180 | Soybean | plasma membrane | 65.33 | 31.41 |
KRH12166 | Soybean | plasma membrane | 64.67 | 30.89 |
PGSC0003DMT400018916 | Potato | plasma membrane | 64.33 | 30.88 |
KXG20551 | Sorghum | plasma membrane, plastid | 77.0 | 30.68 |
VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 64.33 | 30.63 |
Bra039877.1-P | Field mustard | cytosol | 33.67 | 30.61 |
Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 64.33 | 30.25 |
TraesCS2D01G423700.1 | Wheat | golgi | 64.0 | 29.95 |
TraesCS5D01G061200.2 | Wheat | extracellular | 50.0 | 29.01 |
TraesCS7A01G436000.1 | Wheat | mitochondrion | 20.33 | 28.91 |
CDX78975 | Canola | plasma membrane | 60.33 | 28.68 |
CDY50060 | Canola | plasma membrane | 60.0 | 28.62 |
AT4G20110.2 | Thale cress | plasma membrane | 59.67 | 28.5 |
AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 59.67 | 28.37 |
Bra013445.1-P | Field mustard | plasma membrane | 59.67 | 28.37 |
CDY43178 | Canola | plasma membrane | 59.33 | 28.3 |
Bra023151.1-P | Field mustard | plasma membrane | 59.33 | 28.3 |
CDY02347 | Canola | plasma membrane | 59.33 | 28.3 |
TraesCS4D01G119400.1 | Wheat | golgi | 58.33 | 28.0 |
TraesCS5D01G145500.1 | Wheat | plasma membrane | 57.67 | 27.9 |
TraesCS1D01G131100.1 | Wheat | golgi | 58.0 | 27.49 |
TraesCS4D01G172100.1 | Wheat | golgi | 57.0 | 27.4 |
Bra021940.1-P | Field mustard | plasma membrane | 56.33 | 26.95 |
GSMUA_AchrUn_... | Banana | plasma membrane | 52.67 | 26.87 |
CDY64650 | Canola | plasma membrane | 56.0 | 26.75 |
CDY43647 | Canola | plasma membrane | 56.0 | 26.75 |
TraesCS2D01G105100.1 | Wheat | plasma membrane | 56.67 | 26.73 |
AT2G34940.1 | Thale cress | plasma membrane | 53.33 | 25.89 |
CDY12449 | Canola | cytosol | 23.67 | 24.48 |
GSMUA_Achr7P03630_001 | Banana | plasma membrane | 48.0 | 14.23 |
Protein Annotations
EnsemblPlants:TraesCS7D01G145700.2 | EnsemblPlantsGene:TraesCS7D01G145700 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | MapMan:22.5.2.1 | : |
Description
No Description!
Coordinates
chr7D:-:92804001..92809871
Molecular Weight (calculated)
34110.3 Da
IEP (calculated)
7.533
GRAVY (calculated)
-0.600
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHPDERVEY ELWTNSNDEC GPLCDEQAAF VRSFRGHAQI LERGGYARFT PHYITWYCPE AFRLTRQCQS QCINHGRYVV HAHTRHCRSR KLSLVKSLKR
101: CCWLCRYCAP DPEEDFGEGY EGKQVVVENL RQLCVHRVAN ESGRPWAWWD FAMDYKLRCS MKEKKYSKAC AEEVVASLGL SLEKVLACMG DPDADADNAV
201: LSKEQEDQIG RGSRGDVTIL PTLVINDVQY RGKLERTAVL RAVCAGFKEG TEPQVCLSHD RNGGCWRDEA TNVRAGAVRP DRSGGTSASS TTYIYEQLRR
101: CCWLCRYCAP DPEEDFGEGY EGKQVVVENL RQLCVHRVAN ESGRPWAWWD FAMDYKLRCS MKEKKYSKAC AEEVVASLGL SLEKVLACMG DPDADADNAV
201: LSKEQEDQIG RGSRGDVTIL PTLVINDVQY RGKLERTAVL RAVCAGFKEG TEPQVCLSHD RNGGCWRDEA TNVRAGAVRP DRSGGTSASS TTYIYEQLRR
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.