Factsheet for PGSC0003DMT400018916

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	97.6	95.61
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	77.28	76.67
KRH37180	Soybean	plasma membrane	76.0	76.12
KRH12166	Soybean	plasma membrane	75.84	75.48
CDY50060	Canola	plasma membrane	69.92	69.48
Bra013445.1-P	Field mustard	plasma membrane	69.92	69.26
CDX78975	Canola	plasma membrane	69.92	69.26
AT4G20110.2	Thale cress	plasma membrane	69.12	68.79
GSMUA_Achr3P23680_001	Banana	plasma membrane	61.44	68.21
Os06t0664300-01	Rice	plasma membrane	68.0	66.72
GSMUA_AchrUn_...	Banana	plasma membrane	62.56	66.5
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	10.4	65.66
Zm00001d046945_P001	Maize	plasma membrane	65.28	64.86
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	64.96	64.44
TraesCS7D01G145700.2	Wheat	cytosol	30.88	64.33
TraesCS7D01G471300.1	Wheat	golgi	64.8	64.29
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	64.16	63.96
Os04t0611400-01	Rice	plasma membrane	62.88	62.18
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	64.8	61.74
PGSC0003DMT400077180	Potato	cytosol	59.36	61.42
KXG27024	Sorghum	plasma membrane	60.0	61.27
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	61.6	61.11
TraesCS2A01G425800.2	Wheat	mitochondrion	61.92	60.37
TraesCS2B01G446100.1	Wheat	plasma membrane	61.76	60.12
TraesCS2D01G423700.1	Wheat	golgi	61.6	60.06
PGSC0003DMT400080213	Potato	plasma membrane	59.2	59.29
KXG20551	Sorghum	plasma membrane, plastid	66.08	54.85
TraesCS6A01G310600.1	Wheat	cytosol	28.16	46.44
TraesCS7A01G436000.1	Wheat	mitochondrion	15.52	45.97
GSMUA_Achr7P03630_001	Banana	plasma membrane	59.52	36.76
HORVU2Hr1G099640.3	Barley	extracellular	18.08	17.57

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:M1ABD0
InterPro:PA_domain	PFAM:PF02225	EnsemblPlantsGene:PGSC0003DMG400007334	PGSC:PGSC0003DMG400007334	EnsemblPlants:PGSC0003DMT400018916	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF56	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029565F0	SEG:seg	:	:	:	:

Description

Vacuolar sorting receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400007334]

Coordinates

chr2:-:37629037..37635197

Molecular Weight (calculated)

69748.6 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.403

Length

625 amino acids

Sequence
(BLAST)

001: MGALFFQVLL FSLIVSNVDA RFIVEKNSIS VLSPYSLHSK HDASIGNFGV PDYGGSLVGT VVYPSKGANG CAEFDGDKPF KSKAHRPNIL LLDRGDCYFA
101: LKVWNGQQAG AAAVLVADSI DEALITMDSP EESTDANGYI EKIGIPSALI EKSFGDTLKE ALKKGEEVVI KMDWTESMPH PDQRVEYELW TNSNDECGVR
201: CDEQMNFIKN FKGHAQILEK DGYTMFTPHY ITWYCPEAFI LSSQCKSQCI NHGRYCAPDP EQDFGEGYQG KDVVFENLRQ LCVHRVANES SRSWVWWDYV
301: TDFHIRCSMK QKRYSKECAE EVMKSLDLPV DKIKKCMGDP EANVENDVLK TEQDLQVGRG PRGDVTILPT MVINDVQYRG KLERTAVLKA ICAGFKETTE
401: PSICLSGDLE TNQCLERNGG CWRDPKSNIT ACKDTFRGRV CECPLVNGVQ YKGDGYTSCE AIGPGRCTVN NGGCWSETRN GQTYSACSEG ELSGCKCPYG
501: FKGDGHKCED VDECKEGIVC QCDGCSCKDT WGGFECKCKG NQLYIMEHDT CIERHSSKIG RVLMFSFLAI AVGAGLAGYT FYKYRLRSYM DSEIMAIMSQ
601: YMPLDNHNQN QVVHHEAEPL RQSSV

Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)

001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A

Arabidopsis Description

VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.