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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, vacuole

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 3
  • golgi 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane, vacuole
Any Predictor:mitochondrion, secretory
iPSORT:secretory
MultiLoc:mitochondrion
Predotar:secretory
TargetP:mitochondrion
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G34940.1 HORVU4Hr1G035250.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G387100.1 Wheat extracellular, plasma membrane 92.68 96.51
TraesCS7D01G471300.1 Wheat golgi 92.53 96.35
TraesCS7A01G483700.1 Wheat golgi, plasma membrane 92.07 96.33
TraesCS7A01G281400.1 Wheat cytosol, nucleus, plastid 12.96 85.86
TraesCS7D01G145700.2 Wheat cytosol 38.26 83.67
Zm00001d046945_P001 Maize plasma membrane 78.05 81.4
Os06t0664300-01 Rice plasma membrane 78.66 81.0
KXG20551 Sorghum plasma membrane, plastid 78.81 68.66
GSMUA_AchrUn_... Banana plasma membrane 61.43 68.54
VIT_01s0011g01050.t01 Wine grape extracellular, plasma membrane, vacuole 63.26 65.87
KRH37180 Soybean plasma membrane 62.35 65.54
KRH12166 Soybean plasma membrane 62.2 64.97
PGSC0003DMT400018916 Potato plasma membrane 61.74 64.8
Solyc02g081970.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 62.2 63.95
TraesCS6A01G310600.1 Wheat cytosol 36.28 62.8
CDY02347 Canola plasma membrane 59.45 62.0
Bra023151.1-P Field mustard plasma membrane 59.45 62.0
AT1G30900.1 Thale cress extracellular, plasma membrane, vacuole 59.6 61.97
CDY43178 Canola plasma membrane 59.3 61.84
CDX78975 Canola plasma membrane 59.15 61.49
Bra013445.1-P Field mustard plasma membrane 58.84 61.17
AT4G20110.2 Thale cress plasma membrane 58.38 60.99
CDY50060 Canola plasma membrane 58.38 60.89
HORVU5Hr1G046490.2 Barley cytosol 50.76 59.15
Bra039877.1-P Field mustard cytosol 29.57 58.79
HORVU4Hr1G022950.10 Barley extracellular 54.88 57.6
AT2G34940.1 Thale cress plasma membrane 53.81 57.12
CDY12449 Canola cytosol 25.15 56.9
TraesCS7A01G436000.1 Wheat mitochondrion 18.29 56.87
CDY64650 Canola plasma membrane 53.2 55.57
Bra021940.1-P Field mustard plasma membrane 53.05 55.5
CDY43647 Canola plasma membrane 52.74 55.1
HORVU1Hr1G032780.9 Barley extracellular 51.37 52.99
HORVU4Hr1G050280.9 Barley plastid 50.0 50.0
HORVU5Hr1G046470.1 Barley cytosol, mitochondrion 3.96 44.83
HORVU2Hr1G017770.3 Barley plastid 55.18 43.46
GSMUA_Achr7P03630_001 Banana plasma membrane 56.86 36.86
HORVU2Hr1G099640.3 Barley extracellular 17.53 17.88
Protein Annotations
Gene3D:2.10.25.10MapMan:22.5.2.1Gene3D:3.50.30.30UniProt:A0A287XS82InterPro:EGF-like_Ca-bd_domInterPro:EGF_Ca-bd_CS
GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005575GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:HORVU7Hr1G109180EnsemblPlants:HORVU7Hr1G109180.2InterPro:PA_domainPFAM:PF02225ScanProsite:PS01187PANTHER:PTHR22765
PANTHER:PTHR22765:SF56SMART:SM00179SUPFAM:SSF52025SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000B46ABF1
SEG:seg:::::
Description
No Description!
Coordinates
chrchr7H:+:627298831..627303681
Molecular Weight (calculated)
72184.5 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.367
Length
656 amino acids
Sequence
(BLAST)
001: MGGGGARPLL AAVLVAAAMV APARGRFVVE KSSVRVLAPE HIRGHHDAAI GNFGVPDYGG TLTGVVLYPD KKATGCAEFP DRFRSKSGRP VVLLLDRGEC
101: YFALKSWNAQ QAGAAAVLIA DTVDEQLLTM DTPEASPDTR YLDKLNIPSA LVNRAFGESL KRMADKADAE GEVVVKLDWR ESMPHPDERV EYELWTNSND
201: ECGPRCDEQA AFVKSFRGHA QILERGGYAR FTPHYITWYC PEAFRLTRQC QSQCINHGRY CAPDPEEDFG EGYEGKQVVV ENLRQLCVHR VANESGRPWA
301: WWDFAMDYKL RCSMKEKKYS KACAEEVVAS LGLPLDKVLA CMGDPDADAD NAVLSKEQED QIGRGSRGDV TILPTLVIND VQYRGKLERT AVLKAICAGF
401: KEGTEPQVCL SHDMETNECL HRNGGCWRDE ATNATACRDT YRGRVCECPV VNGVRYDGDG YTHCKGTTST FLSSTRRRSG NSAGVLMSLP CLFVSAVGPG
501: RCALNHGGCW AETKGERTFS ACSDTALSGC RCPPGFQGDG HKCEDMDECR EKLACTCPDC RCKNTWGSYE CGCRGNQVYI RGEDVCVANS MSRFGWLVAV
601: LAVSCAAGLG VAGFVFYKYR LRSYMDSEIM AIMSQYMPLD SQNNEHQPLR QHAPDA
Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.