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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G281400.1 Wheat cytosol, nucleus, plastid 16.9 49.49
Bra039877.1-P Field mustard cytosol 48.62 42.73
CDY62643 Canola mitochondrion 13.79 42.11
CDY42565 Canola cytosol 13.79 38.84
CDX99194 Canola cytosol 13.79 38.84
CDY70452 Canola cytosol 13.79 38.84
CDY38158 Canola cytosol, plasma membrane 39.31 37.75
AT1G30900.1 Thale cress extracellular, plasma membrane, vacuole 79.31 36.45
CDY43178 Canola plasma membrane 78.97 36.41
CDY02347 Canola plasma membrane 78.97 36.41
CDY62642 Canola cytosol, plasma membrane, plastid 16.9 35.0
CDY10980 Canola cytosol 20.69 33.71
TraesCS7A01G436000.1 Wheat mitochondrion 23.45 32.23
GSMUA_Achr3P23680_001 Banana plasma membrane 58.97 30.37
CDY64650 Canola plasma membrane 63.79 29.46
CDY43647 Canola plasma membrane 63.79 29.46
CDY50060 Canola plasma membrane 62.07 28.62
CDX78975 Canola plasma membrane 61.72 28.37
GSMUA_AchrUn_... Banana plasma membrane 55.86 27.55
Os06t0664300-01 Rice plasma membrane 60.0 27.32
Zm00001d046945_P001 Maize plasma membrane 57.59 26.55
TraesCS7D01G471300.1 Wheat golgi 57.59 26.51
TraesCS7A01G483700.1 Wheat golgi, plasma membrane 57.24 26.48
TraesCS7B01G387100.1 Wheat extracellular, plasma membrane 56.9 26.19
TraesCS6A01G310600.1 Wheat cytosol 33.45 25.59
TraesCS2A01G425800.2 Wheat mitochondrion 56.21 25.43
TraesCS2B01G446100.1 Wheat plasma membrane 56.21 25.39
Os04t0611400-01 Rice plasma membrane 54.83 25.16
HORVU7Hr1G109180.2 Barley mitochondrion, plasma membrane, vacuole 56.9 25.15
CDX93144 Canola extracellular, plasma membrane, vacuole 52.41 24.92
CDY37219 Canola extracellular, golgi, plasma membrane 53.45 24.84
CDX81459 Canola plasma membrane 53.45 24.84
TraesCS2D01G423700.1 Wheat golgi 54.83 24.8
CDY60753 Canola plasma membrane 52.76 24.68
CDX91478 Canola plasma membrane 52.41 24.52
CDY65441 Canola plasma membrane 52.41 24.09
CDY13344 Canola plasma membrane 51.38 23.84
CDX67539 Canola plasma membrane 51.38 23.84
TraesCS7D01G145700.2 Wheat cytosol 24.48 23.67
CDX78128 Canola plasma membrane 50.69 23.52
CDX73599 Canola plasma membrane 50.34 23.36
KXG27024 Sorghum plasma membrane 48.62 23.04
KXG20551 Sorghum plasma membrane, plastid 58.28 22.44
CDY04821 Canola mitochondrion, plasma membrane 47.59 21.73
GSMUA_Achr7P03630_001 Banana plasma membrane 57.59 16.5
HORVU2Hr1G099640.3 Barley extracellular 28.28 12.75
CDY22565 Canola nucleus 1.38 3.51
CDY38157 Canola mitochondrion 2.07 1.62
Protein Annotations
EnsemblPlants:CDY12449EnsemblPlantsGene:GSBRNA2T00061729001GO:A0A078FHG4GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR22765PANTHER:PTHR22765:SF56ProteinID:CDY12449ProteinID:CDY12449.1TMHMM:TMhelixUniParc:UPI0004EDC9C5
UniProt:A0A078FHG4MapMan:35.1::::
Description
BnaC08g09380DBnaC08g09380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHG4]
Coordinates
chrLK032022:-:653071..654860
Molecular Weight (calculated)
32050.7 Da
IEP (calculated)
7.611
GRAVY (calculated)
-0.262
Length
290 amino acids
Sequence
(BLAST)
001: MKEKKYSTEC AESVVKSLGL PLEKIKKCMG DPAVDVENEV LKAEQALRLG QGDRGDVTIL PTLIINNAQY RGKLERNAIL NTNECLEANG GCWQDKKSNV
101: TACKDTFRGR VCKCPVVNGV RMFIKEMAIL HVSLSLLDLN VINSPYGPAI CSINQGGCWS EIRKGETFLA CLNSEASGGR RPPGFKGDGL KCEDIDECKE
201: KSACQCDGCK YTCIERSGSR IGWFFTFVIL PAVAGICVAG YVFYKYRLRS YMDSEIMTIM SQYMPLDSQN TNDPMTGEPQ QQQLRLTSAA
Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.