CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38157	Canola	mitochondrion	64.91	20.0
CDY04821	Canola	mitochondrion, plasma membrane	72.81	13.07
CDX67539	Canola	plasma membrane	55.26	10.08
CDY13344	Canola	plasma membrane	55.26	10.08
CDX91478	Canola	plasma membrane	54.39	10.0
CDX73599	Canola	plasma membrane	54.39	9.92
CDX78128	Canola	plasma membrane	54.39	9.92
CDY60753	Canola	plasma membrane	53.51	9.84
CDX93144	Canola	extracellular, plasma membrane, vacuole	52.63	9.84
CDY65441	Canola	plasma membrane	53.51	9.67
CDY37219	Canola	extracellular, golgi, plasma membrane	52.63	9.62
CDX81459	Canola	plasma membrane	51.75	9.46
CDY02347	Canola	plasma membrane	46.49	8.43
CDY43178	Canola	plasma membrane	46.49	8.43
CDY50060	Canola	plasma membrane	42.98	7.79
CDX78975	Canola	plasma membrane	42.98	7.77
CDY43647	Canola	plasma membrane	39.47	7.17
CDY64650	Canola	plasma membrane	38.6	7.01
CDY62643	Canola	mitochondrion	4.39	5.26
CDY38158	Canola	cytosol, plasma membrane	13.16	4.97
CDY10980	Canola	cytosol	6.14	3.93
CDX99194	Canola	cytosol	3.51	3.88
CDY42565	Canola	cytosol	3.51	3.88
CDY70452	Canola	cytosol	3.51	3.88
CDY62642	Canola	cytosol, plasma membrane, plastid	1.75	1.43
CDY12449	Canola	cytosol	3.51	1.38
Zm00001d005060_P001	Maize	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY22565	EnsemblPlantsGene:GSBRNA2T00019170001	PANTHER:PTHR22765	PANTHER:PTHR22765:SF58	ProteinID:CDY22565	ProteinID:CDY22565.1
UniParc:UPI0004EDEF67	UniProt:A0A078G7Y4	MapMan:35.1	:	:	:

Description

BnaC05g24030DBnaC05g24030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7Y4]

Coordinates

chrLK032133:+:16861..17205

Molecular Weight (calculated)

12668.0 Da

IEP (calculated)

9.012

GRAVY (calculated)

-0.477

Length

114 amino acids

Sequence
(BLAST)

001: MDTLEDKTSD VEYYPQNITS PSAVASRSLG SAIKTSIAHG EPVHISLDWR EALPHPNYRV AYKLRTKSND ECGSKYDAQI QFLKRFKGAA QILEKEATLA
101: SLPTTSPGIV LKRF

Best Arabidopsis Sequence Match ( AT2G30290.1 )
(BLAST)

001: MRTTNVWLVV IVWVTVGWSS CTGRFVVEKN NLRVTSPESI RGVYECALGN FGVPQYGGSM SGAVVYPKTN QKACKNFDDF EISFRSRVAG LPTFVLVDRG
101: DCYFTLKAWN AQRAGAATIL VADNRPEQLI TMDAPEDETS DADYLQNITI PSALVSRSLG SAIKTAIAHG DPVHISLDWR EALPHPNDRV AYELWTNSND
201: ECGSKCDAQI RFLKRFKGAA QILEKGGYTR FTPHYITWYC PEAFLASRQC KTQCINGGRY CAPDPEQDFS RGYNGKDVII QNLRQACFFR VTNESGKPWL
301: WWDYVTDFAI RCPMKEEKYN KKCADQVIQS LGVDVKKIDK CIGDIDANAE NPVLKEEQVA QVGKGSRGDV TILPTIVINN RQYRGKLQRS AVLKALCSGF
401: RETTEPPICL TEDIETNECL QNNGGCWEDK TTNITACRDT FRGRVCQCPI VQGVKFLGDG YTHCEASGAL RCGINNGGCW KQTQMGKTYS ACRDDHSKGC
501: KCPPGFIGDG LKECKDVNEC EEKTACQCRD CKCKNTWGSY ECSCSGSLLY IREHDICINR DARGDFSWGV IWIIIMGLGA AALGAYTVYK YRIRTYMDSE
601: IRAIMAQYMP LDNNPNTQLS SQLEL

Arabidopsis Description

VSR2VACUOLAR SORTING RECEPTOR 2 [Source:UniProtKB/TrEMBL;Acc:F4IMR9]
SUBAcon: [golgi,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.