CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90517
CDX90537
CDX92459
CDX92950
CDX92952
CDY09687
CDY09707
CDY16539
CDY25483
CDY25484
CDY32227
CDY32254
CDY32255
CDY32256
CDY32258
CDY32259
CDY34441
CDY45086
CDY65601
CDY68173
CDY69151

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	CDX90537	AT4G16190.1	23738689
AT2G14720.1	CDY09707	AT4G16190.1	23738689
AT2G14720.1	CDY32227	AT4G16190.1	23738689
AT2G14720.1	CDY34441	AT4G16190.1	23738689
AT2G14720.1	CDX90517	AT4G16500.1	23738689
AT2G14720.1	CDX92950	AT4G16500.1	23738689
AT2G14720.1	CDX92952	AT4G16500.1	23738689
AT2G14720.1	CDY09687	AT4G16500.1	23738689
AT2G14720.1	CDY25483	AT4G16500.1	23738689
AT2G14720.1	CDY25484	AT4G16500.1	23738689
AT2G14720.1	CDY32254	AT4G16500.1	23738689
AT2G14720.1	CDY32255	AT4G16500.1	23738689
AT2G14720.1	CDY32256	AT4G16500.1	23738689
AT2G14720.1	CDY32258	AT4G16500.1	23738689
AT2G14720.1	CDY32259	AT4G16500.1	23738689
AT2G14720.1	CDY65601	AT4G16500.1	23738689
AT2G14720.1	CDY68173	AT4G16500.1	23738689
AT2G14720.1	CDY69151	AT4G16500.1	23738689
AT2G14720.1	CDX92459	AT5G20500.1	23738689
AT2G14720.1	CDY16539	AT5G20500.1	23738689
AT2G14720.1	CDY45086	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37219	Canola	extracellular, golgi, plasma membrane	99.04	99.04
CDY65441	Canola	plasma membrane	95.19	94.14
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	94.71	94.11
CDX93144	Canola	extracellular, plasma membrane, vacuole	91.67	93.77
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	93.91	93.31
KRH27575	Soybean	endoplasmic reticulum	82.37	81.85
KRG91109	Soybean	endoplasmic reticulum	82.53	81.62
KRH35666	Soybean	endoplasmic reticulum	82.21	81.3
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	81.09	80.32
Solyc01g107130.2.1	Tomato	nucleus	80.93	80.16
Zm00001d012390_P001	Maize	cytosol	11.54	80.0
KRH77935	Soybean	endoplasmic reticulum	82.37	79.94
VIT_03s0091g00740.t01	Wine grape	plasma membrane	80.45	79.56
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	12.34	76.24
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	68.43	75.18
GSMUA_Achr10P...	Banana	cytosol	67.15	73.77
Os10t0346600-00	Rice	plasma membrane	74.04	73.22
Zm00001d014302_P003	Maize	plasma membrane	71.96	72.65
TraesCS1D01G131100.1	Wheat	golgi	72.76	71.72
TraesCS1B01G148200.1	Wheat	plasma membrane	72.44	71.52
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	72.76	71.16
CDX67539	Canola	plasma membrane	70.03	69.92
CDY13344	Canola	plasma membrane	70.03	69.92
CDX73599	Canola	plasma membrane	69.87	69.76
CDX78128	Canola	plasma membrane	69.71	69.6
Zm00001d014303_P002	Maize	plasma membrane	67.95	68.5
CDX91478	Canola	plasma membrane	67.95	68.39
CDY60753	Canola	plasma membrane	67.95	68.39
HORVU1Hr1G032780.9	Barley	extracellular	68.43	67.14
CDY62643	Canola	mitochondrion	10.1	66.32
CDY04821	Canola	mitochondrion, plasma membrane	67.31	66.14
CDY38158	Canola	cytosol, plasma membrane	30.13	62.25
CDY50060	Canola	plasma membrane	61.06	60.57
CDX78975	Canola	plasma membrane	61.22	60.54
CDY43178	Canola	plasma membrane	60.9	60.41
CDY02347	Canola	plasma membrane	60.74	60.25
CDY62642	Canola	cytosol, plasma membrane, plastid	13.46	60.0
CDY38157	Canola	mitochondrion	34.46	58.11
CDY64650	Canola	plasma membrane	55.93	55.57
CDY43647	Canola	plasma membrane	55.77	55.41
CDY42565	Canola	cytosol	9.13	55.34
CDX99194	Canola	cytosol	9.13	55.34
CDY70452	Canola	cytosol	9.13	55.34
CDY12449	Canola	cytosol	24.84	53.45
CDY22565	Canola	nucleus	9.46	51.75
CDY10980	Canola	cytosol	13.78	48.31

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	GO:A0A078CZP6	EnsemblPlants:CDX81459	ProteinID:CDX81459
ProteinID:CDX81459.1	ncoils:Coil	InterPro:EGF-like_CS	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00135047001	InterPro:PA_domain	PFAM:PF02225	PFAM:PF12662
ScanProsite:PS01186	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EAFDB3	InterPro:cEGF	SEG:seg	:

Description

BnaC09g08700D

Coordinates

chrLK031824:+:1948044..1951470

Molecular Weight (calculated)

69255.0 Da

IEP (calculated)

5.183

GRAVY (calculated)

-0.412

Length

624 amino acids

Sequence
(BLAST)

001: MTKQFLCFLL LLSIPFLCES RFVVEKNSLS VTSPDSIKGA HDCAIGNFGI PQYGGSMAGT VVYPKENQKS CKEFSDFSIS FKSQPGALPT FLLVDRGDCF
101: FALKVWNAQK AGASAVLVAD NVDEPLITMD TPEEDAASAK YIENITIPSA LVTKGFGEKL KKAIGGGDMV NLNLDWREAV PHPDARVEYE LWTNSNDECG
201: VKCDMLMEFV KDFKGAAQIL EKGGYTQFRP HYITWYCPHA FTLSRQCKSQ CINKGRYCAP DPEQDFSSGY DGKDVVVENL RQLCVFKVAN ETGKPWVWWD
301: YVTDFQIRCP MKEKKYNKEC ADSVIKSLGI DSRKLDKCMG DPNADSDNPV LKEEQDAQVG KGSRGDVTIL PTLVVNNRQY RGKLEKGAVL KALCSGFEET
401: TEPAICLSTE VESNECLDNN GGCWQDKSAN ITACKDTFRG RVCECPRVDG VQFKGDGYSH CEPSGPGRCT INNGGCWHEE RDGHAFSACV DKDSVKCECP
501: PGFKGDGFKK CEDINECKEK KACQCPECSC KNTWGSYDCS CSGDLLYMRD HDTCISKTGS QVRSAWAAVW LIMLSLGLAA GGAYLVYKYR LRQYMDSEIR
601: AIMAQYMPLD SQPEVPNHVN DERA

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.