Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60753 | Canola | plasma membrane | 98.23 | 98.23 |
| CDX67539 | Canola | plasma membrane | 80.81 | 80.16 |
| CDY13344 | Canola | plasma membrane | 80.81 | 80.16 |
| CDX73599 | Canola | plasma membrane | 80.65 | 80.0 |
| CDX78128 | Canola | plasma membrane | 80.32 | 79.68 |
| VIT_08s0058g01360.t01 | Wine grape | plasma membrane | 72.42 | 71.96 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 69.03 | 68.59 |
| CDX81459 | Canola | plasma membrane | 68.39 | 67.95 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 65.65 | 66.72 |
| CDY65441 | Canola | plasma membrane | 67.9 | 66.72 |
| CDY62643 | Canola | mitochondrion | 10.16 | 66.32 |
| CDY04821 | Canola | mitochondrion, plasma membrane | 67.1 | 65.51 |
| CDY38158 | Canola | cytosol, plasma membrane | 30.65 | 62.91 |
| CDX78975 | Canola | plasma membrane | 59.19 | 58.16 |
| CDY50060 | Canola | plasma membrane | 58.71 | 57.87 |
| CDY62642 | Canola | cytosol, plasma membrane, plastid | 13.06 | 57.86 |
| CDY38157 | Canola | mitochondrion | 34.35 | 57.57 |
| CDY43178 | Canola | plasma membrane | 57.74 | 56.92 |
| CDY02347 | Canola | plasma membrane | 57.58 | 56.76 |
| CDY22565 | Canola | nucleus | 10.0 | 54.39 |
| CDY64650 | Canola | plasma membrane | 54.68 | 53.98 |
| CDY43647 | Canola | plasma membrane | 54.52 | 53.82 |
| CDY42565 | Canola | cytosol | 8.87 | 53.4 |
| CDY70452 | Canola | cytosol | 8.87 | 53.4 |
| CDX99194 | Canola | cytosol | 8.87 | 53.4 |
| CDY12449 | Canola | cytosol | 24.52 | 52.41 |
| CDY10980 | Canola | cytosol | 13.39 | 46.63 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | GO:A0A078DW81 | EnsemblPlants:CDX91478 | ProteinID:CDX91478 |
| ProteinID:CDX91478.1 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| EnsemblPlantsGene:GSBRNA2T00152832001 | InterPro:PA_domain | PFAM:PF02225 | PFAM:PF12662 | ScanProsite:PS01187 | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF54 | SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEA944 |
| InterPro:cEGF | SEG:seg | : | : | : | : |
Description
BnaC04g06720D
Coordinates
chrLK031867:-:1344282..1348097
Molecular Weight (calculated)
68851.9 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.284
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFGVLALSF ILILELAFGT FLVEKNNLKV TSPDSIKGVY ECAIGNFGIP KYGGTLVGTV VYPMSNHKGC KSFSEFGVSF KSSPGSLPTF LLIDRGDCYF
101: ALKAWNAQQA GAAAILVSDN KLEPLITMDT PEEDTANADY LEKINIPSAL ISKSLGDSIK SAISDGNMVN MKLDWTESVP HPDERVEYEL WTDSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGYTQFTPH YISWYCPKAF MLSRQCKSQC INHGRYCAPD PEQDFTRGYD GKDVVVQNLR HACVFRVVNE TGKAWKWWDY
301: ATDFSVRCPM KYNKYTSECA DEVIKSLGID LEKVYLCMGD TEGDVENPVL KAEQESQVGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AICAGFQEST
401: EPSICLTEDQ NTNECLENNG GCWQDRAANI TACLDTFRGR LCECPTVQGV KFVGDGYTHC KASGALRCGI NNGGCWRETR GGYTYSACTD DHSSVCKCPP
501: GFRGDGVKSC EDVDECKEKL ACQCPECKCK NTWGSYECSC RKGLFYLREL DTCIGAFGAV KLGWSFVLIL LLALIAATLS GYAIYKYRIR HYMDSEIRSI
601: MAQYMPLDSQ PNNTETHMDF
101: ALKAWNAQQA GAAAILVSDN KLEPLITMDT PEEDTANADY LEKINIPSAL ISKSLGDSIK SAISDGNMVN MKLDWTESVP HPDERVEYEL WTDSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGYTQFTPH YISWYCPKAF MLSRQCKSQC INHGRYCAPD PEQDFTRGYD GKDVVVQNLR HACVFRVVNE TGKAWKWWDY
301: ATDFSVRCPM KYNKYTSECA DEVIKSLGID LEKVYLCMGD TEGDVENPVL KAEQESQVGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AICAGFQEST
401: EPSICLTEDQ NTNECLENNG GCWQDRAANI TACLDTFRGR LCECPTVQGV KFVGDGYTHC KASGALRCGI NNGGCWRETR GGYTYSACTD DHSSVCKCPP
501: GFRGDGVKSC EDVDECKEKL ACQCPECKCK NTWGSYECSC RKGLFYLREL DTCIGAFGAV KLGWSFVLIL LLALIAATLS GYAIYKYRIR HYMDSEIRSI
601: MAQYMPLDSQ PNNTETHMDF
001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
Arabidopsis Description
VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.