CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 7
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005096.1-P	Field mustard	plasma membrane	99.52	99.52
CDX91478	Canola	plasma membrane	98.23	98.23
CDX73599	Canola	plasma membrane	80.65	80.0
CDX67539	Canola	plasma membrane	80.48	79.84
CDY13344	Canola	plasma membrane	80.48	79.84
CDX78128	Canola	plasma membrane	80.32	79.68
VIT_08s0058g01360.t01	Wine grape	plasma membrane	72.42	71.96
CDY37219	Canola	extracellular, golgi, plasma membrane	69.03	68.59
CDX81459	Canola	plasma membrane	68.39	67.95
CDX93144	Canola	extracellular, plasma membrane, vacuole	65.65	66.72
CDY65441	Canola	plasma membrane	67.9	66.72
CDY62643	Canola	mitochondrion	10.16	66.32
CDY04821	Canola	mitochondrion, plasma membrane	66.94	65.35
CDY38158	Canola	cytosol, plasma membrane	30.65	62.91
CDX78975	Canola	plasma membrane	58.87	57.84
CDY50060	Canola	plasma membrane	58.39	57.55
CDY38157	Canola	mitochondrion	34.19	57.3
CDY62642	Canola	cytosol, plasma membrane, plastid	12.9	57.14
CDY43178	Canola	plasma membrane	57.9	57.07
CDY02347	Canola	plasma membrane	57.74	56.92
CDY42565	Canola	cytosol	9.03	54.37
CDY70452	Canola	cytosol	9.03	54.37
CDX99194	Canola	cytosol	9.03	54.37
CDY64650	Canola	plasma membrane	54.35	53.66
CDY22565	Canola	nucleus	9.84	53.51
CDY43647	Canola	plasma membrane	54.19	53.5
CDY12449	Canola	cytosol	24.68	52.76
CDY10980	Canola	cytosol	13.55	47.19

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	GO:A0A078J9L6	UniProt:A0A078J9L6	EnsemblPlants:CDY60753
ProteinID:CDY60753	ProteinID:CDY60753.1	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00030015001	InterPro:PA_domain
PFAM:PF02225	PFAM:PF12662	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179
SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE5190	InterPro:cEGF	SEG:seg

Description

BnaA05g34780DBnaA05g34780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9L6]

Coordinates

chrLK033912:-:23052..26786

Molecular Weight (calculated)

68901.9 Da

IEP (calculated)

5.450

GRAVY (calculated)

-0.292

Length

620 amino acids

Sequence
(BLAST)

001: MKFGVLSFSF VLILELTFGT FLVEKNNLKV TSPDSIKGVY ECAIGNFGIP KYGGTLVGTV VYPMSNHKGC KSFSEFGVSF KSSPGSLPTF LLIDRGDCYF
101: ALKAWNAQQA GAAAILVSDN KLEPLITMDT PEEDTANADY LEKINIPSAL ISKSLGDSIK SAISDGNMVN MKLDWTESVP HPDERVEYEL WTDSNDECGK
201: KCDTQIEFLR NFKGAAQILE KGGYTQFTPH FITWYCPKAF MLSRQCKSQC INHGRYCAPD PEQDFTRGYD GKDVVVQNLR HACVFRVVNE TGKAWKWWDY
301: ATDFSVRCPM KYNKYTSECA DEVIKSLGID LEKVYLCMGD TEGDVENPVL KAEQESQVGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AICAGFQEST
401: EPAICLTEDQ NTNECLENNG GCWQDRAANI TACLDTFRGR LCECPTVQGV KFVGDGYTHC KASGALRCGI NNGGCWRETR GGYTYSACTD DHSSVCKCPP
501: GFKGDGVKSC EDVDECKEKL ACQCPECKCK NTWGSYECTC RKGLFYLREL DTCIGAFGAV KLGWSFVLIL LLALTAATLS GYAIYKYRIR HYMDSEIRSI
601: MAQYMPLDSQ PNNTETHMDF

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.