Factsheet for VIT_08s0058g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_04s0023g02450.t01
VIT_11s0052g00500.t01
VIT_14s0108g01200.t01
VIT_16s0115g00130.t01
VIT_18s0001g13380.t01
VIT_18s0001g13390.t01
VIT_18s0001g13400.t01
VIT_18s0001g15600.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52850.1	VIT_18s0001g15600.t01	AT1G77140.1	10888666
AT3G52850.1	VIT_03s0017g00210.t01	AT3G11130.1	16905657
AT3G52850.1	VIT_16s0115g00130.t01	AT3G11130.1	16905657
AT3G52850.1	VIT_19s0027g01340.t01	AT3G11130.1	16905657
AT3G52850.1	VIT_04s0023g02450.t01	AT4G16190.1	23738689
AT3G52850.1	VIT_18s0001g13380.t01	AT4G16190.1	23738689
AT3G52850.1	VIT_18s0001g13390.t01	AT4G16190.1	23738689
AT3G52850.1	VIT_18s0001g13400.t01	AT4G16190.1	23738689
AT3G52850.1	VIT_11s0052g00500.t01	AT5G20500.1	23738689
AT3G52850.1	VIT_14s0108g01200.t01	AT5G39510.1	10397763

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G52850.1	Thale cress	extracellular, golgi, plasma membrane	76.44	76.56
Bra028535.1-P	Field mustard	plasma membrane	76.12	76.0
CDX73599	Canola	plasma membrane	76.12	76.0
CDX67539	Canola	plasma membrane	75.96	75.84
CDY13344	Canola	plasma membrane	75.96	75.84
CDX78128	Canola	plasma membrane	75.64	75.52
Bra006952.1-P	Field mustard	plasma membrane	75.8	74.02
Bra005096.1-P	Field mustard	plasma membrane	71.96	72.42
CDX91478	Canola	plasma membrane	71.96	72.42
CDY60753	Canola	plasma membrane	71.96	72.42
VIT_03s0091g00740.t01	Wine grape	plasma membrane	70.67	69.89
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	61.22	60.63
VIT_08s0040g00700.t01	Wine grape	plasma membrane	14.1	53.01
VIT_11s0052g00060.t01	Wine grape	extracellular	10.26	41.83

Protein Annotations

EntrezGene:100265315	wikigene:100265315	Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	ProteinID:CBI18031
ProteinID:CBI18031.3	UniProt:D7SQY6	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	EMBL:FN594967	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005770	GO:GO:0005783	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886
GO:GO:0006623	GO:GO:0006810	GO:GO:0006896	GO:GO:0007034	GO:GO:0008150	GO:GO:0009940
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100265315	wikigene:LOC100265315	InterPro:PA_domain	PFAM:PF02225
ScanProsite:PS01187	PFscan:PS51257	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025
SignalP:SignalP-noTM	TIGR:TC57674	TMHMM:TMhelix	UniParc:UPI00015CB473	ArrayExpress:VIT_08s0058g01360	EnsemblPlantsGene:VIT_08s0058g01360
EnsemblPlants:VIT_08s0058g01360.t01	unigene:Vvi.438	RefSeq:XP_002267833	RefSeq:XP_002267833.2	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:10818719..10825825

Molecular Weight (calculated)

69407.2 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.363

Length

624 amino acids

Sequence
(BLAST)

001: MREKLGLLVC VWFVLWGSCV GRFVVEKNSL RVTSPESLKD VYECAIGNFG VPQYGGTMVG TVVYPKANQK ACKSFEDVEI SFKSKPGGLP TFLLADRGDC
101: FFTLKAWNAQ NAGAAAILVA DDKIEPLITM DTPEEENAHA DYLQNITIPS ALISKSFGDS IKNALSKGDM VNINLDWRES LPHPDERVEY EFWTNSNDEC
201: GPKCESQIEF VKNFKGAAQI FERKGYTQFT PHYITWYCPD AFILSKQCKS QCINHGRYCA PDPEQDFSRG YDGKDVVVQN LRQACFFKVA NESGKPWLWW
301: DYVTDFAIRC PMKDKKYSKE CADQVILSLG VDVKKIDQCI GDPEADVDNP VLKAEQDAQI GKGSRGDVTI LPTLVINNRQ YRGKLDKGAV LKAICAGFQE
401: TTEPTICLSD EVETNECLEN NGGCWQDKAA NITACKDTFR GRVCECPIVQ GVKFTGDGYT NCEASGALRC EINNGGCWKD TKDGSTYSAC VDDNSKGCQC
501: PQGFKGDGVK TCEDVNECKD KVACNCPECK CKNTWGSYEC SCSGNLLYMR EHDACISKHV KTEVSWSFIW VIILGLAAAG VGGYALYKYR IRRYMDSEIR
601: AIMAQYMPLD NQGEIPNHVP HGDI

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.