Factsheet for VIT_14s0108g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_02s0012g01850.t01
VIT_04s0008g05650.t01
VIT_08s0058g01360.t01
VIT_16s0039g01850.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT5G39510.1	VIT_08s0058g01360.t01	AT3G52850.1	10397763
AT5G39510.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT5G39510.1	VIT_04s0008g05650.t01	AT4G32150.1	24556575
AT5G39510.1	VIT_16s0039g01850.t01	AT5G16830.1	10397763
AT5G39510.1	VIT_02s0012g01850.t01	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06580.t01	Wine grape	extracellular	81.0	81.0
PGSC0003DMT400050219	Potato	cytosol	80.09	80.09
Solyc03g115760.2.1	Tomato	nucleus, plastid	79.19	79.19
KRH18448	Soybean	endoplasmic reticulum	75.57	75.57
KRG93576	Soybean	cytosol	75.57	75.57
VIT_01s0113g00540.t01	Wine grape	cytosol	71.49	71.82
CDY37005	Canola	cytosol, golgi, nucleus	71.49	71.49
CDY19995	Canola	cytosol	71.04	71.04
Bra036218.1-P	Field mustard	cytosol	71.04	71.04
CDY00099	Canola	cytosol	70.14	70.14
AT3G29100.3	Thale cress	cytosol	70.14	70.14
CDY30250	Canola	cytosol, golgi, nucleus	70.14	70.14
CDX74451	Canola	cytosol, golgi, nucleus	70.14	70.14
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	70.14	70.14
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	69.23	69.23
KRH40042	Soybean	cytosol	65.16	63.44
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	21.72	52.17
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	21.72	52.17
CDX95233	Canola	mitochondrion	20.81	50.0
AT5G39630.1	Thale cress	cytosol	40.72	43.48

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100264508	wikigene:100264508	MapMan:22.7.2.1	ProteinID:CCB47580
ProteinID:CCB47580.1	ncoils:Coil	UniProt:F6H5V9	EMBL:FN595239	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829
GO:GO:0006623	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896
GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:GOSR2/Membrin/Bos1
InterPro:IPR038407	EntrezGene:LOC100264508	wikigene:LOC100264508	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TIGR:TC57443
TMHMM:TMhelix	UniParc:UPI00015C9283	ArrayExpress:VIT_14s0108g01200	EnsemblPlantsGene:VIT_14s0108g01200	EnsemblPlants:VIT_14s0108g01200.t01	InterPro:Vesicle_trsprt_v-SNARE_N
unigene:Vvi.4845	RefSeq:XP_002283972	RefSeq:XP_002283972.1	RefSeq:XP_010661089.1	RefSeq:XP_010661090.1	RefSeq:XP_010661091.1
SEG:seg	InterPro:v-SNARE_N_sf	:	:	:	:

Description

No Description!

Coordinates

chr14:-:29808239..29813491

Molecular Weight (calculated)

24773.0 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.410

Length

221 amino acids

Sequence
(BLAST)

001: MGEVFDGYER QYCELSANLS KKCTTASLLD GEQKRQQISE IKAGLDEADS LIRKMDLEAR GLQPNVKAVL LAKLREYKSD LNNLKSEVKR IASANSNQAA
101: RDDLLESGMA DAMSVSANQR ARLMMSTDRL NQSSDRIKES KRTMLETEEL GVSILQDLHQ QRQSLLHAND TLHGVDDNVS RSKKILTNMS RRMSRNKCII
201: GSIIAVLVVV IALILYFKLS K

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.