Factsheet for VIT_01s0113g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06580.t01	Wine grape	extracellular	78.18	77.83
Solyc05g013050.2.1	Tomato	cytosol	74.55	74.21
PGSC0003DMT400072860	Potato	cytosol	73.18	72.85
AT1G26670.1	Thale cress	cytosol, golgi, nucleus	73.18	72.52
CDY28553	Canola	cytosol	72.73	72.07
CDY44068	Canola	cytosol	72.73	72.07
VIT_14s0108g01200.t01	Wine grape	cytosol	71.82	71.49
KRH74936	Soybean	endoplasmic reticulum	70.0	69.37
KRH70794	Soybean	endoplasmic reticulum	69.55	68.92
Bra041108.1-P	Field mustard	cytosol	72.73	64.0
CDX79270	Canola	cytosol	34.09	58.14
CDY42125	Canola	mitochondrion	31.36	49.64

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100259152	wikigene:100259152	MapMan:22.7.2.1	UniProt:A5B0Y2
EMBL:AM442796	ProteinID:CAN76283	ProteinID:CAN76283.1	ProteinID:CBI22313	ProteinID:CBI22313.3	ncoils:Coil
EMBL:FN595240	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005802	GO:GO:0005829	GO:GO:0005886	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150
GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407
EntrezGene:LOC100259152	wikigene:LOC100259152	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230
PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TIGR:TC52986	TMHMM:TMhelix
UniParc:UPI000151FDD5	ArrayExpress:VIT_01s0113g00540	EnsemblPlantsGene:VIT_01s0113g00540	EnsemblPlants:VIT_01s0113g00540.t01	InterPro:Vesicle_trsprt_v-SNARE_N	unigene:Vvi.966
RefSeq:XP_002266843	RefSeq:XP_002266843.1	InterPro:v-SNARE_N_sf	:	:	:

Description

No Description!

Coordinates

chr1:+:13887532..13910553

Molecular Weight (calculated)

24903.3 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.367

Length

220 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCELSTNLS RKCTSASVLD GEEKHQKISE IEAGLEEAVI LIRKMDLEAR SLQAGVKAML LAKLREYKAD LNKLKKEVKK ITSPDTNQVA
101: REELLESGMV DAHMVSADQK GRLAMSTEKL NESSDRIKES RRTMLETEDL GVSILQDLHQ QRQTLLHAHE KLHGVDNAID KSKKILTAMS KRMSRNKWIV
201: GSVISALVLA IIFILYFKLS

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.