CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70794	Soybean	endoplasmic reticulum	94.59	94.59
PGSC0003DMT400072860	Potato	cytosol	72.07	72.4
Solyc05g013050.2.1	Tomato	cytosol	72.07	72.4
AT1G26670.1	Thale cress	cytosol, golgi, nucleus	70.72	70.72
CDY44068	Canola	cytosol	70.72	70.72
VIT_01s0113g00540.t01	Wine grape	cytosol	69.37	70.0
CDY28553	Canola	cytosol	69.82	69.82
KRH54584	Soybean	cytosol	68.02	68.33
Bra041108.1-P	Field mustard	cytosol	70.72	62.8
KRG93576	Soybean	cytosol	62.16	62.44
KRH18448	Soybean	endoplasmic reticulum	62.16	62.44
KRH63296	Soybean	cytosol	22.97	57.95
CDX79270	Canola	cytosol	33.33	57.36
KRH40042	Soybean	cytosol	57.21	55.95
CDY42125	Canola	mitochondrion	30.18	48.2

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	EMBL:ACUP02000095	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G052800
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789
GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147
GO:GO:0048280	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	UniProt:I1J5U5	InterPro:IPR000727	InterPro:IPR038407
EnsemblPlants:KRH74936	ProteinID:KRH74936	ProteinID:KRH74936.1	ProteinID:KRH74937.1	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00023BB1A6	InterPro:Vesicle_trsprt_v-SNARE_N	InterPro:v-SNARE_N_sf

Description

hypothetical protein

Coordinates

chr1:-:6451907..6456616

Molecular Weight (calculated)

25356.5 Da

IEP (calculated)

8.237

GRAVY (calculated)

-0.478

Length

222 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCELSANLS RKCSSASLVS DQEQKPQKLS EIKAGLDDAD VLIRKMDLEA RSLQPSVKAM LLAKLREYKS DLTNLKKEFK RLTSPNADEA
101: AREELLETGM TDTHLASADQ RERLTMSVER LNQSSERIRD SHRTLLETEE LGINIIQDLH SQRETLLNSH KRLHGIDDAI DKSKKVLTTM SRRITRNKWI
201: VASVIGALVF AIVIILFYKL SH

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.