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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 2
  • mitochondrion 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, golgi, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:golgi
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH74936 Soybean endoplasmic reticulum 94.59 94.59
PGSC0003DMT400072860 Potato cytosol 70.27 70.59
Solyc05g013050.2.1 Tomato cytosol 70.27 70.59
CDY44068 Canola cytosol 70.27 70.27
VIT_01s0113g00540.t01 Wine grape cytosol 68.92 69.55
CDY28553 Canola cytosol 69.37 69.37
AT1G26670.1 Thale cress cytosol, golgi, nucleus 68.92 68.92
KRH54584 Soybean cytosol 67.12 67.42
Bra041108.1-P Field mustard cytosol 70.27 62.4
KRG93576 Soybean cytosol 61.26 61.54
KRH18448 Soybean endoplasmic reticulum 61.26 61.54
KRH63296 Soybean cytosol 23.42 59.09
CDX79270 Canola cytosol 33.33 57.36
KRH40042 Soybean cytosol 55.41 54.19
CDY42125 Canola mitochondrion 28.83 46.04
Protein Annotations
Gene3D:1.20.5.110Gene3D:1.20.58.400MapMan:22.7.2.1EMBL:ACUP02000800ncoils:CoilEnsemblPlantsGene:GLYMA_02G111400
GO:GO:0000149GO:GO:0003674GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0005829GO:GO:0006623GO:GO:0006810GO:GO:0006886GO:GO:0006888
GO:GO:0006891GO:GO:0006896GO:GO:0008150GO:GO:0009987GO:GO:0012507GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0016192GO:GO:0031201GO:GO:0031902GO:GO:0042147
GO:GO:0048280GO:GO:0061025InterPro:GOSR2/Membrin/Bos1UniProt:I1JE83InterPro:IPR000727InterPro:IPR038407
EnsemblPlants:KRH70794ProteinID:KRH70794ProteinID:KRH70794.1PFAM:PF05008PFAM:PF12352PIRSF:PIRSF028865
PANTHER:PTHR21230PANTHER:PTHR21230:SF52SMART:SM00397InterPro:SNARESUPFAM:SSF47661SUPFAM:SSF58038
TMHMM:TMhelixInterPro:T_SNARE_domUniParc:UPI00023BE970InterPro:Vesicle_trsprt_v-SNARE_NInterPro:v-SNARE_N_sf:
Description
hypothetical protein
Coordinates
chr2:-:10731924..10738444
Molecular Weight (calculated)
25315.5 Da
IEP (calculated)
9.089
GRAVY (calculated)
-0.455
Length
222 amino acids
Sequence
(BLAST)
001: MSEVFEGYER QYCELSANLS RKCSSASLVS GQEQQQQKLS EIKAGLDDAD VLIRKMDLEA RSLQPSVKAM LLAKLREYKS DLTNLKKEFK RLTSPNADEV
101: AREELLETGM ANTHLASADQ RERLTMSVER INQSGERIRE SHRTLLETEE LGVNILQDLH SQRETLLNSH KRLHGIDDAI DKSKKVLTTM SRRITRNKWI
201: VASVIGALVF AIVIILFYKL SR
Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.