Factsheet for PGSC0003DMT400072860

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013050.2.1	Tomato	cytosol	98.19	98.19
VIT_01s0113g00540.t01	Wine grape	cytosol	72.85	73.18
CDY44068	Canola	cytosol	72.85	72.52
KRH74936	Soybean	endoplasmic reticulum	72.4	72.07
CDY28553	Canola	cytosol	71.95	71.62
KRH70794	Soybean	endoplasmic reticulum	70.59	70.27
AT1G26670.1	Thale cress	cytosol, golgi, nucleus	70.14	69.82
PGSC0003DMT400050219	Potato	cytosol	69.68	69.68
Bra041108.1-P	Field mustard	cytosol	72.85	64.4
CDX79270	Canola	cytosol	32.13	55.04
CDY42125	Canola	mitochondrion	29.86	47.48

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:102585718	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	UniProt:M1CR34
PFAM:PF05008	PFAM:PF12352	EnsemblPlantsGene:PGSC0003DMG400028344	PGSC:PGSC0003DMG400028344	EnsemblPlants:PGSC0003DMT400072860	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI000294EC70	InterPro:Vesicle_trsprt_v-SNARE_N	RefSeq:XP_006348747.1	RefSeq:XP_006348748.1	SEG:seg	InterPro:v-SNARE_N_sf

Description

Vesicle transport V-snare protein vti1a [Source:PGSC_GENE;Acc:PGSC0003DMG400028344]

Coordinates

chr5:-:95189..98577

Molecular Weight (calculated)

25075.4 Da

IEP (calculated)

9.078

GRAVY (calculated)

-0.393

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCELSVNLS RKCNSAALLA DGEPKKQQIS ELKVGLDDAD VLIRKMDLEA RSLQPSLKAT LLAKLREYKS DLNKLKKEVN KLTLTSANQA
101: AHDLESGMMD PHAASANQRE RLAMSTERLD QSSDRIRESR RIALETEELS VLILGDLHQQ RETLLHSHNK LHGVDDAIDK SKKILTSMSR RISRNKWIMG
201: SVIGALILAI IIILYFKLFH H

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.