Factsheet for PGSC0003DMT400050219

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400038357
PGSC0003DMT400043211
PGSC0003DMT400045973
PGSC0003DMT400056956
PGSC0003DMT400067225
PGSC0003DMT400068230
PGSC0003DMT400069241
PGSC0003DMT400084469
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT5G39510.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT5G39510.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT5G39510.1	PGSC0003DMT400067225	AT4G32150.1	24556575
AT5G39510.1	PGSC0003DMT400069241	AT5G16830.1	10397763
AT5G39510.1	PGSC0003DMT400038357	AT5G46860.1	12815100
AT5G39510.1	PGSC0003DMT400043211	AT5G46860.1	12815100
AT5G39510.1	PGSC0003DMT400045973	AT5G46860.1	12815100
AT5G39510.1	PGSC0003DMT400068230	AT5G46860.1	12815100
AT5G39510.1	PGSC0003DMT400084469	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115760.2.1	Tomato	nucleus, plastid	98.19	98.19
VIT_14s0108g01200.t01	Wine grape	cytosol	80.09	80.09
Bra036218.1-P	Field mustard	cytosol	78.28	78.28
CDY19995	Canola	cytosol	78.28	78.28
CDY00099	Canola	cytosol	77.38	77.38
KRH18448	Soybean	endoplasmic reticulum	77.38	77.38
KRG93576	Soybean	cytosol	77.38	77.38
AT3G29100.3	Thale cress	cytosol	76.02	76.02
CDY37005	Canola	cytosol, golgi, nucleus	73.76	73.76
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	73.76	73.76
CDY30250	Canola	cytosol, golgi, nucleus	72.4	72.4
CDX74451	Canola	cytosol, golgi, nucleus	71.95	71.95
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	71.95	71.95
PGSC0003DMT400072860	Potato	cytosol	69.68	69.68
KRH40042	Soybean	cytosol	67.42	65.64
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
CDX95233	Canola	mitochondrion	19.91	47.83
AT5G39630.1	Thale cress	cytosol	42.99	45.89

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ProteinID:ABA40452	ProteinID:ABA40452.1	ProteinID:ABB29948
ProteinID:ABB29948.1	ncoils:Coil	EMBL:DQ191651	EMBL:DQ235191	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407
UniProt:M1BPY2	PFAM:PF05008	PFAM:PF12352	EnsemblPlantsGene:PGSC0003DMG400019502	PGSC:PGSC0003DMG400019502	EnsemblPlants:PGSC0003DMT400050219
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000296D8F7	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

Vesicle transport v-SNARE 11 [Source:PGSC_GENE;Acc:PGSC0003DMG400019502]

Coordinates

chr3:+:55630618..55634374

Molecular Weight (calculated)

25083.4 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.457

Length

221 amino acids

Sequence
(BLAST)

001: MSQVFEGYER QYCELSANLT KKCNSATILD GEQKKQKVSE IKAGLDDAEA LIRKMDLEAR SLPPNVKATL LAKLREYKSD LNNLKTEVKR ITSGNANQAA
101: RDELLESGMA DANMVSADQR QRLMMSTDRL NRSSDRIRDS RKTMLETEDL GVSILQDLHQ QRQSLLHAHD TLHGVDDNIS RSKKILTTMS RRMSRNKWII
201: GTIIVVLVLA ILLVLYFKLA H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.