Factsheet for Solyc03g115760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g015640.2.1
Solyc06g062360.2.1
Solyc06g065950.2.1
Solyc06g072760.2.1
Solyc07g066170.2.1
Solyc08g005200.2.1
Solyc08g076540.2.1
Solyc11g066910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT5G39510.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT5G39510.1	Solyc06g065950.2.1	AT4G32150.1	24556575
AT5G39510.1	Solyc06g072760.2.1	AT5G16830.1	10397763
AT5G39510.1	Solyc06g062360.2.1	AT5G46860.1	12815100
AT5G39510.1	Solyc08g005200.2.1	AT5G46860.1	12815100
AT5G39510.1	Solyc08g076540.2.1	AT5G46860.1	12815100
AT5G39510.1	Solyc11g066910.1.1	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050219	Potato	cytosol	98.19	98.19
VIT_14s0108g01200.t01	Wine grape	cytosol	79.19	79.19
Bra036218.1-P	Field mustard	cytosol	77.83	77.83
CDY19995	Canola	cytosol	77.83	77.83
CDY00099	Canola	cytosol	76.92	76.92
KRH18448	Soybean	endoplasmic reticulum	76.92	76.92
KRG93576	Soybean	cytosol	76.92	76.92
AT3G29100.3	Thale cress	cytosol	75.57	75.57
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	74.66	74.66
CDY37005	Canola	cytosol, golgi, nucleus	74.21	74.21
CDY30250	Canola	cytosol, golgi, nucleus	71.95	71.95
CDX74451	Canola	cytosol, golgi, nucleus	71.49	71.49
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	71.49	71.49
Solyc05g013050.2.1	Tomato	cytosol	70.59	70.59
KRH40042	Soybean	cytosol	67.42	65.64
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
CDX95233	Canola	mitochondrion	19.91	47.83
AT5G39630.1	Thale cress	cytosol	43.44	46.38

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829
GO:GO:0006623	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896
GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:GOSR2/Membrin/Bos1
InterPro:IPR038407	UniProt:K4BL78	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230
PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	EnsemblPlantsGene:Solyc03g115760.2	EnsemblPlants:Solyc03g115760.2.1
TMHMM:TMhelix	UniParc:UPI0002768B42	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

No Description!

Coordinates

chr3:+:65373005..65376860

Molecular Weight (calculated)

25138.6 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.411

Length

221 amino acids

Sequence
(BLAST)

001: MSQVFEGYER QYCELSAILT KKCNSATILD GEQKKQKLSE IKAGLDDAEA LIRKMDLEAR SLPPNVKATL LAKLREYKSD LNNLKTEVKR ITSGNVNQAA
101: RDELLESGMA DANMVSADQR QRLMMSTERL NRSSDRIRDS RKTMLETEDL GVSILQDLHQ QRQSLLHAHD TLHGVDDNIS RSKKILTTMS RRMSRNKWII
201: GTIIVVLVLA ILLVLYFKLA H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.