Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036218.1-P | Field mustard | cytosol | 92.31 | 92.31 |
| CDY00099 | Canola | cytosol | 92.31 | 92.31 |
| CDY19995 | Canola | cytosol | 92.31 | 92.31 |
| AT5G39510.1 | Thale cress | cytosol, golgi, nucleus | 83.26 | 83.26 |
| PGSC0003DMT400050219 | Potato | cytosol | 76.02 | 76.02 |
| Solyc03g115760.2.1 | Tomato | nucleus, plastid | 75.57 | 75.57 |
| KRG93576 | Soybean | cytosol | 74.66 | 74.66 |
| KRH18448 | Soybean | endoplasmic reticulum | 74.21 | 74.21 |
| VIT_14s0108g01200.t01 | Wine grape | cytosol | 70.14 | 70.14 |
| KRH40042 | Soybean | cytosol | 61.09 | 59.47 |
| AT1G26670.1 | Thale cress | cytosol, golgi, nucleus | 58.82 | 58.56 |
| AT5G39630.1 | Thale cress | cytosol | 46.61 | 49.76 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | EntrezGene:822557 | ProteinID:AEE77536.1 | EMBL:AK118255 |
| ProteinID:ANM65584.1 | ProteinID:ANM65585.1 | ProteinID:ANM65586.1 | ArrayExpress:AT3G29100 | EnsemblPlantsGene:AT3G29100 | RefSeq:AT3G29100 |
| TAIR:AT3G29100 | RefSeq:AT3G29100-TAIR-G | EnsemblPlants:AT3G29100.3 | ProteinID:BAB01986.1 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0012507 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | GO:GO:0061025 | InterPro:GOSR2/Membrin/Bos1 |
| InterPro:IPR038407 | RefSeq:NP_001189997.1 | RefSeq:NP_001327542.1 | RefSeq:NP_001327543.1 | RefSeq:NP_001327544.1 | PFAM:PF05008 |
| PFAM:PF12352 | PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | UniProt:Q9LVP9 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI00000487A0 | Symbol:VTI13 | InterPro:Vesicle_trsprt_v-SNARE_N |
| InterPro:v-SNARE_N_sf | : | : | : | : | : |
Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
Coordinates
chr3:-:11075712..11077540
Molecular Weight (calculated)
25027.3 Da
IEP (calculated)
9.974
GRAVY (calculated)
-0.471
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.