Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39510.1 | Thale cress | cytosol, golgi, nucleus | 51.69 | 48.42 |
| AT3G29100.3 | Thale cress | cytosol | 49.76 | 46.61 |
| Solyc03g115760.2.1 | Tomato | nucleus, plastid | 46.38 | 43.44 |
| KRH18448 | Soybean | endoplasmic reticulum | 45.89 | 42.99 |
| PGSC0003DMT400050219 | Potato | cytosol | 45.89 | 42.99 |
| KRG93576 | Soybean | cytosol | 45.41 | 42.53 |
| VIT_14s0108g01200.t01 | Wine grape | cytosol | 43.48 | 40.72 |
| AT1G26670.1 | Thale cress | cytosol, golgi, nucleus | 41.06 | 38.29 |
| KRH40042 | Soybean | cytosol | 38.65 | 35.24 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | EntrezGene:833959 | ProteinID:AED94456.1 | ArrayExpress:AT5G39630 |
| EnsemblPlantsGene:AT5G39630 | RefSeq:AT5G39630 | TAIR:AT5G39630 | RefSeq:AT5G39630-TAIR-G | EnsemblPlants:AT5G39630.1 | TAIR:AT5G39630.1 |
| Unigene:At.55257 | ncoils:Coil | EMBL:DQ447016 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 |
| GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | InterPro:IPR038407 | RefSeq:NP_198779.1 | PFAM:PF05008 |
| PFAM:PF12352 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | UniProt:Q1PDQ2 | InterPro:SNARE | SUPFAM:SSF47661 |
| SUPFAM:SSF58038 | UniParc:UPI00001627BF | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg | InterPro:v-SNARE_N_sf | : |
Description
Vesicle transport v-SNARE family protein [Source:UniProtKB/TrEMBL;Acc:Q1PDQ2]
Coordinates
chr5:+:15868262..15869714
Molecular Weight (calculated)
23936.0 Da
IEP (calculated)
9.722
GRAVY (calculated)
-0.593
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNVFHEYDQ QYSELSINLS KKCSLAFSLK GGEKKEKLSE ITYDLENAEK LISKMDHAAS NLPPNIKSIL LEKLKESKSS LKRLRNEIKR NTSENLKVTT
101: REEVLEAEKA DLADQRSRLM KSTEGLVRTR EMIKDSQRKL LETENIGISI LENLQRQKES LQNSQAMLHE IDDTVKESRS IVRSIKIKEF FTVTAPIIIY
201: FLFKLVK
101: REEVLEAEKA DLADQRSRLM KSTEGLVRTR EMIKDSQRKL LETENIGISI LENLQRQKES LQNSQAMLHE IDDTVKESRS IVRSIKIKEF FTVTAPIIIY
201: FLFKLVK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.