Factsheet for AT1G26670.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0113g00540.t01	Wine grape	cytosol	72.52	73.18
KRH74936	Soybean	endoplasmic reticulum	70.72	70.72
Solyc05g013050.2.1	Tomato	cytosol	70.27	70.59
PGSC0003DMT400072860	Potato	cytosol	69.82	70.14
CDX79270	Canola	cytosol	40.54	69.77
KRH70794	Soybean	endoplasmic reticulum	68.92	68.92
CDY42125	Canola	mitochondrion	40.09	64.03
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	59.91	60.18
AT3G29100.3	Thale cress	cytosol	58.56	58.82
AT5G39630.1	Thale cress	cytosol	38.29	41.06

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	EntrezGene:839208	UniProt:A0A178W140	ProteinID:AAF87026.1
ProteinID:AEE30719.1	EMBL:AF114751	ArrayExpress:AT1G26670	EnsemblPlantsGene:AT1G26670	RefSeq:AT1G26670	TAIR:AT1G26670
RefSeq:AT1G26670-TAIR-G	EnsemblPlants:AT1G26670.1	TAIR:AT1G26670.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005483
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794
GO:GO:0005802	GO:GO:0005829	GO:GO:0005886	GO:GO:0006623	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0031902
GO:GO:0042147	GO:GO:0046907	GO:GO:0048280	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407
RefSeq:NP_564255.1	ProteinID:OAP11988.1	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	UniProt:Q9SEL5	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0000162ECD	Symbol:VTI12	InterPro:Vesicle_trsprt_v-SNARE_N
SEG:seg	InterPro:v-SNARE_N_sf	:	:	:	:

Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]

Coordinates

chr1:+:9215770..9218010

Molecular Weight (calculated)

25058.3 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.424

Length

222 amino acids

Sequence
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.