Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072860 | Potato | cytosol | 98.19 | 98.19 |
| VIT_01s0113g00540.t01 | Wine grape | cytosol | 74.21 | 74.55 |
| CDY44068 | Canola | cytosol | 73.3 | 72.97 |
| CDY28553 | Canola | cytosol | 72.4 | 72.07 |
| KRH74936 | Soybean | endoplasmic reticulum | 72.4 | 72.07 |
| Solyc03g115760.2.1 | Tomato | nucleus, plastid | 70.59 | 70.59 |
| AT1G26670.1 | Thale cress | cytosol, golgi, nucleus | 70.59 | 70.27 |
| KRH70794 | Soybean | endoplasmic reticulum | 70.59 | 70.27 |
| Bra041108.1-P | Field mustard | cytosol | 73.3 | 64.8 |
| CDX79270 | Canola | cytosol | 32.58 | 55.81 |
| CDY42125 | Canola | mitochondrion | 30.77 | 48.92 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 |
| GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 |
| GO:GO:0048280 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR000727 | InterPro:IPR038407 | UniProt:K4BY26 | PFAM:PF05008 |
| PFAM:PF12352 | PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | SMART:SM00397 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | EnsemblPlantsGene:Solyc05g013050.2 | EnsemblPlants:Solyc05g013050.2.1 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0002765CB2 | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg | InterPro:v-SNARE_N_sf | : | : |
Description
Vesicle transport v-SNARE 12 [Source:Projected from Arabidopsis thaliana (AT1G26670) UniProtKB/Swiss-Prot;Acc:Q9SEL5]
Coordinates
chr5:+:6156617..6159887
Molecular Weight (calculated)
24978.2 Da
IEP (calculated)
9.078
GRAVY (calculated)
-0.400
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFEGYER QYCELSVNLS RKCNSAALLA DGEPKKQQIS ELKVGLDDAD VLIRKMDLEA RSLQPSLKAT LLAKLREYKS DLNKLKKEVN KLTLTSANQA
101: AHDLESGMMD PHAASASQRE RLAMSTERLD QSSDRIRESR RIALETEDLG VSILGDLHQQ RETLLHSHNK LHGVDDAIDK SKKILTSMSR RISRNKWIMG
201: SVIGALILAI IIILYFKLFH H
101: AHDLESGMMD PHAASASQRE RLAMSTERLD QSSDRIRESR RIALETEDLG VSILGDLHQQ RETLLHSHNK LHGVDDAIDK SKKILTSMSR RISRNKWIMG
201: SVIGALILAI IIILYFKLFH H
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.