CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44068	Canola	cytosol	99.1	99.1
VIT_01s0113g00540.t01	Wine grape	cytosol	72.07	72.73
Solyc05g013050.2.1	Tomato	cytosol	72.07	72.4
PGSC0003DMT400072860	Potato	cytosol	71.62	71.95
KRH74936	Soybean	endoplasmic reticulum	69.82	69.82
KRH70794	Soybean	endoplasmic reticulum	69.37	69.37
CDX79270	Canola	cytosol	39.19	67.44
CDY19995	Canola	cytosol	61.71	61.99
CDY00099	Canola	cytosol	61.26	61.54
CDY37005	Canola	cytosol, golgi, nucleus	59.46	59.73
CDY30250	Canola	cytosol, golgi, nucleus	58.56	58.82
CDX74451	Canola	cytosol, golgi, nucleus	58.11	58.37
CDY42125	Canola	mitochondrion	36.49	58.27
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	17.12	41.3
CDX95233	Canola	mitochondrion	16.67	40.22

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:A0A078GV94	UniProt:A0A078GV94	EnsemblPlants:CDY28553
ProteinID:CDY28553	ProteinID:CDY28553.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSBRNA2T00040491001	InterPro:IPR038407
PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0004EBB892	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg
InterPro:v-SNARE_N_sf	:	:	:	:	:

Description

BnaC02g19220DBnaC02g19220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV94]

Coordinates

chrLK032222:+:92891..94205

Molecular Weight (calculated)

25164.3 Da

IEP (calculated)

9.109

GRAVY (calculated)

-0.511

Length

222 amino acids

Sequence
(BLAST)

001: MSDVFEGYER QYCELSTNLT RKSNSASLLP HGDDKKGKLG EIKSGIDEAD VLIRKMDLEA RSLQPSAKAT CLAKLREYKS DLNQLKKEFK RVSSPDVNQS
101: SREELMESGM ADPLSVSADQ RERLAMSVER LDQSSDRIRE SRRTMMETEE LGVSILQDLS QQRQTLLHSH SKLHGVDEAI DKSKKVLTAM SRRMTRNKWI
201: VTSVIIALIL AIILIISFKL SH

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [cytosol,nucleus,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.